CF417107

Overview
NameCF417107
Unique NameCF417107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_HELPG (50S ribosomal protein L7/L12 OS=Helicobacter pylori (strain G27) GN=rplL PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            F++ L   GAE K+KVIK VR  TGLGLKE+K+  EK P +LK GV K+EA+ I  KL+EVGA+V ++
Sbjct:   59 FNVILADSGAE-KIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEVK 125          
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_HELP2 (50S ribosomal protein L7/L12 OS=Helicobacter pylori (strain P12) GN=rplL PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            F++ L   GAE K+KVIK VR  TGLGLKE+K+  EK P +LK GV K+EA+ I  KL+EVGA+V ++
Sbjct:   59 FNVILADSGAE-KIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEVK 125          
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_HELAH (50S ribosomal protein L7/L12 OS=Helicobacter acinonychis (strain Sheeba) GN=rplL PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            F++ L   GAE K+KVIK VR  TGLGLKE+K+  EK P +LK GV K+EA+ I  KL+EVGA+V ++
Sbjct:   59 FNVILADSGAE-KIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEIK 125          
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_GEOTN (50S ribosomal protein L7/L12 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplL PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 3
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ L   GA+ K+KVIK VR  TGLGLKE+K+LV+  P  LK  V+K+EA+ I AKL+EVGA+V ++
Sbjct:   57 FDVILADAGAQ-KIKVIKVVREITGLGLKEAKDLVDNTPKPLKEAVSKEEAEEIKAKLEEVGAKVEVK 123          
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_THEM4 (50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.287e-11
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPT---LLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ L+ +GA+ K+ VIK VR  TGLGLKE+K+LVEK  T   ++K+GV KDEA+ I  KL+E GA+V ++
Sbjct:   60 FDVVLKSFGAK-KINVIKVVREITGLGLKEAKDLVEKAGTPDAVIKQGVNKDEAEEIKKKLEEAGAEVELK 129          
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_RHOPB (50S ribosomal protein L7/L12 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.287e-11
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  165 EAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            E K++VIKEVR  TGLGLKE+K+LVE  P  +K GV KDEAD I A+L++ GA+V ++
Sbjct:   66 EKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKDEADKIKAQLEKAGAKVELK 123          
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_PROMH (50S ribosomal protein L7/L12 OS=Proteus mirabilis (strain HI4320) GN=rplL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.287e-11
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 3
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ L+G G   K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E GA+V ++
Sbjct:   55 FDVILKGIGGN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEVK 121          
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_CLOPS (50S ribosomal protein L7/L12 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.287e-11
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 3
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ L   GA  K+KVIK VR  TGLGLKE+KE+V+  P  LK  V K+EA+++ AKL EVGA+V ++
Sbjct:   55 FDVVLTNAGAN-KIKVIKAVRELTGLGLKEAKEIVDGAPKTLKEAVAKEEAEDMKAKLAEVGAEVELK 121          
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_CLOPE (50S ribosomal protein L7/L12 OS=Clostridium perfringens GN=rplL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.287e-11
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 3
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ L   GA  K+KVIK VR  TGLGLKE+KE+V+  P  LK  V K+EA+++ AKL EVGA+V ++
Sbjct:   55 FDVVLTNAGAN-KIKVIKAVRELTGLGLKEAKEIVDGAPKTLKEAVAKEEAEDMKAKLAEVGAEVELK 121          
BLAST of CF417107 vs. ExPASy Swiss-Prot
Match: RL7_CLOP1 (50S ribosomal protein L7/L12 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.287e-11
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 3
Query:  135 FDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADNIVAKLKEVGAQVSME 338
            FD+ L   GA  K+KVIK VR  TGLGLKE+KE+V+  P  LK  V K+EA+++ AKL EVGA+V ++
Sbjct:   55 FDVVLTNAGAN-KIKVIKAVRELTGLGLKEAKEIVDGAPKTLKEAVAKEEAEDMKAKLAEVGAEVELK 121          
The following BLAST results are available for this feature:
BLAST of CF417107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
RL7_HELPG9.855e-1255.8850S ribosomal protein L7/L12 OS=Helicobacter pylor... [more]
RL7_HELP29.855e-1255.8850S ribosomal protein L7/L12 OS=Helicobacter pylor... [more]
RL7_HELAH9.855e-1255.8850S ribosomal protein L7/L12 OS=Helicobacter acino... [more]
RL7_GEOTN9.855e-1255.8850S ribosomal protein L7/L12 OS=Geobacillus thermo... [more]
RL7_THEM41.287e-1153.5250S ribosomal protein L7/L12 OS=Thermosipho melane... [more]
RL7_RHOPB1.287e-1158.6250S ribosomal protein L7/L12 OS=Rhodopseudomonas p... [more]
RL7_PROMH1.287e-1152.9450S ribosomal protein L7/L12 OS=Proteus mirabilis ... [more]
RL7_CLOPS1.287e-1154.4150S ribosomal protein L7/L12 OS=Clostridium perfri... [more]
RL7_CLOPE1.287e-1154.4150S ribosomal protein L7/L12 OS=Clostridium perfri... [more]
RL7_CLOP11.287e-1154.4150S ribosomal protein L7/L12 OS=Clostridium perfri... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-037 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_D5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417107 ID=CF417107; Name=CF417107; organism=Citrus sinensis; type=EST; length=607bp
GGAACAAATTGGGAATTAAAGAAATGCCGAACATGTGCGTAATGATGCCC
GGAATGGGGTTTTCCGTGAAGGGCGCCACCGCGAGAGGAGGAACTGGGAC
CGGAAAGGCAGAGGAGAAAGTAGAGAAGACGGTGTTCGATTTGAAGCTGG
AAGGGTATGGTGCTGAGGCGAAGCTTAAGGTGATTAAGGAAGTTAGAGGG
TTTACGGGTTTGGGGTTGAAAGAGTCTAAAGAGTTGGTGGAGAAAGTTCC
CACGTTGTTGAAAAGGGGCGTTACCAAAGACGAGGCTGACAACATTGTTG
CTAAACTGAAGGAAGTTGGCGCTCAAGTCTCCATGGAGTGAGCTTGACTT
TATCAGAGGAGTGAATGATGAAGAACTTGAAGTCAAGACTTTGGAACTAT
GGCTAGTTAATATCAAAAGGATCCGATTCCGATCAATATCATTCTTCAAC
TATCTGCATGTGAGGGTGATAAACGCATGTCTTTCATAATACACAACATT
CATTGATAAAGCTAGTTTGTTGCGTTCCCAAATAGAATCATTTTACACAA
ACTGGCCTTTATTTTTAAAATTTCATACAACTTCTGTAGAACTGATTTCT
GATGACG
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