CF417117

Overview
NameCF417117
Unique NameCF417117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_DICDI (Eukaryotic translation initiation factor 2 subunit 1 OS=Dictyostelium discoideum GN=eif2s1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 90/225 (40.00%), Postives = 129/225 (57.33%), Query Frame = 3
Query:    3 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLG-----IDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMR----------KAEAAGNND----CPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAIEK 620
            V+V+RVDK+KGYIDLSKRRV+ E+   CEER++KSK VH I+R+VA  L      +  + LY    WPLY KYGHA+EAFK+ +T+P SV N                      + E  +  L++ I +++ PQP K+RAD+E+ C+ ++G+  IK A+           KA   G  D      V IKLVAPPLYV+     +KE+G+S++ + +   +E I K
Sbjct:   72 VVVVRVDKDKGYIDLSKRRVTPEEYAQCEERFHKSKAVHGIVRYVATKLSTEDNVVKTKHLYTKFVWPLYTKYGHAYEAFKLSITEP-SVFNGFD-------------------IAENERKVLMETIIQKLKPQPHKVRADLEITCYDYEGIDAIKHAITASQNHALSVLKAPEDGKFDEKAFGVVTIKLVAPPLYVMVGTFDEKEKGLSMVGQCVDVLSEEITK 276          
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_DROME (Eukaryotic translation initiation factor 2 subunit 1 OS=Drosophila melanogaster GN=eIF-2alpha PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.794e-36
Identity = 82/204 (40.20%), Postives = 120/204 (58.82%), Query Frame = 3
Query:    3 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGID----LEELYVNIGWPLYWKYGH---AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAI 593
            V+V+RVDKEKGYIDLSKRRVS ED++ C ER+ K+K ++S++RHVA+ LG +    LE+LY    W    KY +   A++ FK  VTDP +V +    E                    E K+ L+ NI+R++    +KIRAD+E  C+ ++G+  +K ++ K       + P++I L+APPLYV+TT T  K  G+  L  AI
Sbjct:   70 VVVIRVDKEKGYIDLSKRRVSPEDVEKCTERFAKAKAINSLLRHVADILGFEGNEKLEDLYQKTAWHFEKKYNNKTVAYDIFKQSVTDP-TVFDECNLE-------------------PETKEVLLSNIKRKLVSPTVKIRADIECSCYGYEGIDAVKASLTKGLELSTEELPIRINLIAPPLYVMTTSTTKKTDGLKALEVAI 253          
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_METJA (Translation initiation factor 2 subunit alpha OS=Methanocaldococcus jannaschii GN=eif2a PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.860e-16
Identity = 57/205 (27.80%), Postives = 97/205 (47.32%), Query Frame = 3
Query:    9 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKA-EAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAIEK 620
            VLRVD+ KG+IDLS +RV+E+  +A  + + + +    ++   AE LG  LEE +  +G+ L  ++G  + AF+ +V +   VL+ L                    ++EE K+ L +  +  +    +++   +EMK +  DG+  IK A+  A +A    D  VKI  +  P Y +     D + G  V  K        I+K
Sbjct:   68 VLRVDERKGHIDLSLKRVTEQQKRAKVQEWKRFQRASKMLERAAEKLGKSLEEAWEEVGYLLEDEFGELYNAFETMVIEGKEVLDDL-------------------EISEEWKNVLYEVAKESIELTNVEVEGVIEMKSYAPDGIKQIKKALTTALKANPYEDVEVKITYIGAPKYRVVVIAPDYKSGEEVFKKVCEKAVATIKK 253          
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_METS3 (Translation initiation factor 2 subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.162e-13
Identity = 53/203 (26.11%), Postives = 94/203 (46.31%), Query Frame = 3
Query:    9 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAIE 617
            VLRV+ +KG++D S +R+ E+      + +   +     +   A++LG  L + Y  +G+ L   +G  + AF+   T  D    SLT E                 +++E  DA+ +   + +TP  + I   V+++ F  DGV  I +A++ AE  G+ +  +K++ V  P Y +T  + D       L  A   C E +E
Sbjct:   68 VLRVNPKKGHVDASLKRIREDQRTKKIQHWKIEQKAEKFLELSAKSLGKSLNDAYDEVGYELMDIFGDVYGAFE---TAADDGAKSLTDE----------------GISQEWADAITEIANKNITPPEVHISGYVDIETFVPDGVDVIIEALKAAEDNGDEEEEIKVQCVGAPRYRITVKSTDYILAEKALKAAADRCIEIVE 251          
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_METKA (Translation initiation factor 2 subunit alpha OS=Methanopyrus kandleri GN=eif2a PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 52/204 (25.49%), Postives = 95/204 (46.57%), Query Frame = 3
Query:    9 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAIEK 620
            V+RV+ ++ Y +LS R+V++   +   + + + +    ++   AE LG DL+E Y   G+ L  +YG  ++A              L R   E GP+      V     E++ +  ++NI     P  +KI A V++ C   +GV  I++A+ K E     D  ++++ V  P Y +T    D      ++ KA  A  + +E+
Sbjct:   68 VIRVNPKRKYANLSLRKVTDHQRKEKLKEWKREQRAEKLLEMAAEELGKDLDEAYEEAGYKLIEEYGSLYDA--------------LERAAAEEGPEPLLKAGVPEEWAEKLAELAIENIE----PGRVKIEAYVDLTCPAPNGVEIIREALEKIEEFQQGDVKMEVQYVGAPRYRITVDAPDYRTAEKMVRKAAQAAIDHVEE 253          
BLAST of CF417117 vs. ExPASy Swiss-Prot
Match: IF2A_ARCFU (Translation initiation factor 2 subunit alpha OS=Archaeoglobus fulgidus GN=eif2a PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 56/204 (27.45%), Postives = 93/204 (45.59%), Query Frame = 3
Query:    9 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEVTKVIPAVTEEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKDAMRKAEAAGNNDCPVKIKLVAPPLYVLTTXTLDKEQGISVLNKAIAACTEAIEK 620
            VL V+ ++G+IDLS + V+E   +   +++         +  + E L ID +EL   IG  L  +Y   + AF+                  E   +G EV  + P V EE    + +  R  + P+ +K+R   E+K    DG+  IK A+ +A+ A  N   +K++ V  P Y +     D +   +VL KA     +AI+K
Sbjct:   73 VLDVNPKRGHIDLSIKDVNERQRREKLQQWKNEMKAFKWLEIIGEKLNIDFKELE-KIGKKLMKEYDSVYSAFE------------------EAAFEGYEV--LAPIVGEEFAKEMAEIARENIKPKRVKVRGYFELKSSASDGIERIKKALLEAKKALVNGVEMKLEYVGAPKYRIVVEADDYKTAENVLKKATENVLKAIKK 255          
The following BLAST results are available for this feature:
BLAST of CF417117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
IF2A_DICDI2.051e-3640.00Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_DROME7.794e-3640.20Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_METJA6.860e-1627.80Translation initiation factor 2 subunit alpha OS=M... [more]
IF2A_METS34.162e-1326.11Translation initiation factor 2 subunit alpha OS=M... [more]
IF2A_METKA7.099e-1325.49Translation initiation factor 2 subunit alpha OS=M... [more]
IF2A_ARCFU3.895e-1127.45Translation initiation factor 2 subunit alpha OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-047 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_E7 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417117 ID=CF417117; Name=CF417117; organism=Citrus sinensis; type=EST; length=622bp
CCGTCATGGTCCTGCGTGTCGACAAGGAAAAAGGTTACATTGATTTGAGT
AAAAGAAGAGTTAGTGAAGAGGATATTCAAGCCTGTGAGGAGAGGTACAA
CAAGAGCAAGCTCGTTCACTCTATCATGCGACACGTGGCTGAGACTTTGG
GCATCGATTTAGAGGAACTGTATGTCAATATTGGCTGGCCCTTGTACTGG
AAATATGGTCATGCTTTTGAGGCATTCAAAATCATTGTTACTGATCCTGA
TTCTGTTTTGAATTCCCTCACTCGTGAAGTCAAAGAAATTGGCCCTGATG
GACAGGAGGTAACTAAGGTGATTCCTGCTGTGACGGAGGAAGTGAAAGAT
GCTTTGGTAAAAAATATTAGGAGAAGAATGACCCCACAGCCATTGAAGAT
TCGAGCTGACGTTGAAATGAAATGCTTCCAGTTTGATGGAGTTCTTCATA
TAAAGGATGCCATGCGGAAAGCTGAGGCTGCTGGCAACAATGACTGCCCT
GTGAAAATCAAATTGGTTGCTCCCCCCTTGTATGTGCTTACCACTCANAC
CCTTGACAAGGAGCAAGGGATCTCAGTTCTCAATAAAGCAATTGCGGCTT
GCACTGAAGCTATAGAGAAGCA
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