CF417122

Overview
NameCF417122
Unique NameCF417122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3770 contig Csv1_Contig3770:234..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C22_ARATH (Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.354e-27
Identity = 71/173 (41.04%), Postives = 102/173 (58.96%), Query Frame = 2
Query:  140 TAMETSAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            T  +  + FVP   SG+ +DIG R SM+D ++ +D+     G L     PSAFY VFDGHGG  AA +   +  +   +D + P  S+IN V    L ++  +           + S++S  GTTAL A++ GR+L+VANAGDCRAVL  +G A++MS+DH+P    ERRR+E
Sbjct:   76 TIEKNKSEFVPATRSGAWSDIGSRSSMEDAYLCVDNFMDSFGLLNSEAGPSAFYGVFDGHGGKHAAEFACHHIPRYIVEDQEFP--SEINKV----LSSAFLQTDTAFLEACSLDGSLAS--GTTALAAILFGRSLVVANAGDCRAVLSRQGKAIEMSRDHKPMSSKERRRIE 240          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C59_ARATH (Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.006e-15
Identity = 58/159 (36.48%), Postives = 79/159 (49.69%), Query Frame = 2
Query:  185 GSCADIGPRISMDDEH-IRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G  +  G R SM+D +  RID +   +  LF          VFDGHGG  AA YVK+N   LF      P+        +A+  N               E S +   G+TA TA+++G  LLVAN GD RAV+C  G A+ +S+DH+P    ER+R+E
Sbjct:   35 GYASSPGKRSSMEDFYETRIDGVEGEIVGLF---------GVFDGHGGARAAEYVKQN---LFSNLIRHPKFISDTTAAIADAYNQTDSEFLKS------ENSQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQSDERQRIE 175          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C45_ORYSJ (Probable protein phosphatase 2C 45 OS=Oryza sativa subsp. japonica GN=Os04g0659500 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.716e-15
Identity = 54/159 (33.96%), Postives = 82/159 (51.57%), Query Frame = 2
Query:  185 GSCADIGPRISMDDEH-IRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G  +  G R SM+D +  RID +   +  LF          VFDGHGG + A YVK+N      +         I+D  +A +++++K              S  + CG+TA TA+++G  L VAN GD RA++C  G A+ +S+DH+P    ER+R+E
Sbjct:   29 GYASSPGKRASMEDFYETRIDSVDGQIIGLF---------GVFDGHGGAKVAEYVKQNLFSHLLRHPKF-----ISDTKVA-IDDAYKSTDSEFLESD----SSQNQCGSTASTAVLVGDRLFVANVGDSRAIICRGGNAIAVSKDHKPDQTDERQRIE 168          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C59_ORYSJ (Probable protein phosphatase 2C 59 OS=Oryza sativa subsp. japonica GN=Os06g0698300 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15
Identity = 57/167 (34.13%), Postives = 78/167 (46.71%), Query Frame = 2
Query:  185 GSCADIGPRISMDDEH-IRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADM--------PQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G  +  G R SM+D +  RID +      LF          VFDGHGG  AA +VK+N      K   +         +T    D  L + E SH +                   G+TA TA+++G  LLVAN GD RAV+C  G A+ +S+DH+P    ER+R+E
Sbjct:   66 GYASSPGKRSSMEDFYDTRIDGVDGETVGLF---------GVFDGHGGARAAEFVKQNLFTNLIKHPKLFSDTKSAIAETYTSTDSELLKAETSHNRD-----------------AGSTASTAILVGDRLLVANVGDSRAVICRGGDAIAVSRDHKPDQSDERQRIE 206          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C10_ORYSJ (Probable protein phosphatase 2C 10 OS=Oryza sativa subsp. japonica GN=Os02g0149800 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 55/153 (35.95%), Postives = 75/153 (49.02%), Query Frame = 2
Query:  203 GPRISMDDEH-IRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G R SM+D +  RID +      LF          VFDGHGG  AA YVK++      K       SDI         ++  +           E S +   G+TA TA+++G  LLVAN GD RAV+C  G A+ +S+DH+P    ER+R+E
Sbjct:   90 GKRASMEDFYETRIDGVDGETIGLF---------GVFDGHGGARAAEYVKQHLFSNLIKHPKF--ISDIKSAIAETYNHTDSEFLKA-------ESSHTRDAGSTASTAILVGDRLLVANVGDSRAVVCRGGDAIAVSRDHKPDQSDERQRIE 224          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C13_ORYSJ (Probable protein phosphatase 2C 13 OS=Oryza sativa subsp. japonica GN=Os02g0255100 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.453e-14
Identity = 53/153 (34.64%), Postives = 79/153 (51.63%), Query Frame = 2
Query:  203 GPRISMDDEH-IRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G R +M+D + +++ ++     SLF          VFDGHGGP AA Y+KEN  +   K  +      + D  LA  E   K            E +     G+TA TA+++G +L VAN GD RAV+   G A+ +S+DH+P+   ER+R+E
Sbjct:  119 GKRATMEDFYDVKLTEIDGQAVSLF---------GVFDGHGGPRAAEYLKENLFENLLKHPEF-----LTDTKLAISETYQKTDTDFLES----ESNAFRDDGSTASTAVLVGGHLYVANVGDSRAVVSKAGKAMALSEDHKPNRSDERKRIE 253          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C69_ARATH (Probable protein phosphatase 2C 69 OS=Arabidopsis thaliana GN=At5g10740 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14
Identity = 58/167 (34.73%), Postives = 77/167 (46.11%), Query Frame = 2
Query:  185 GSCADIGPRISMDDE-HIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMK------LFFKDADMPQTSDIN--DVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G  +  G R SM+D    RID ++  +  LF          VFDGHGG  AA YVK +          F  D     T   N  D  L + ENSH +                   G+TA TA+++G  L+VAN GD RAV+   G A+ +S+DH+P    ER R+E
Sbjct:   35 GYASSAGKRSSMEDFFETRIDGINGEIVGLF---------GVFDGHGGARAAEYVKRHLFSNLITHPKFISDTKSAITDAYNHTDSELLKSENSHNRD-----------------AGSTASTAILVGDRLVVANVGDSRAVISRGGKAIAVSRDHKPDQSDERERIE 175          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C71_ARATH (Probable protein phosphatase 2C 71 OS=Arabidopsis thaliana GN=At5g24940 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.210e-14
Identity = 58/167 (34.73%), Postives = 75/167 (44.91%), Query Frame = 2
Query:  185 GSCADIGPRISMDDE-HIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMK------LFFKDAD--MPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G  +  G R SM+D    RID +   +  LF          VFDGHGG  AA YVK +          F  D    +       D  L + ENSH +                   G+TA TA+++G  LLVAN GD RAV+C  G A  +S+DH+P    ER R+E
Sbjct:   35 GYASSAGKRSSMEDFFETRIDGIDGEIVGLF---------GVFDGHGGSRAAEYVKRHLFSNLITHPKFISDTKSAIADAYTHTDSELLKSENSHTRD-----------------AGSTASTAILVGDRLLVANVGDSRAVICRGGNAFAVSRDHKPDQSDERERIE 175          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C11_ARATH (Probable protein phosphatase 2C 11 OS=Arabidopsis thaliana GN=At1g43900 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 50/153 (32.68%), Postives = 70/153 (45.75%), Query Frame = 2
Query:  203 GPRISMDDE-HIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G R +M+D    RI D++  +          AF+ VFDGHGG   A Y+K N  K      D    SD     +   + + ++           E       G+TA TA ++G  L+VAN GD R V    G AV +S DH+P    ER+R+E
Sbjct:  131 GKRATMEDYFETRISDVNGQM---------VAFFGVFDGHGGARTAEYLKNNLFKNLVSHDDF--ISDTKKAIVEVFKQTDEEYLIE-------EAGQPKNAGSTAATAFLIGDKLIVANVGDSRVVASRNGSAVPLSDDHKPDRSDERQRIE 265          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C52_ORYSJ (Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12
Identity = 49/156 (31.41%), Postives = 76/156 (48.72%), Query Frame = 2
Query:  203 GPRISMDD----EHIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G R SM+D    +  +IDD    L            + +FDGHGG  AA Y+KE+  +   K  +    + +       +  ++KK           E       G+TA TA+++G +L VAN GD RAV+   G A+ +S+DH+P+   ER+R+E
Sbjct:  237 GKRASMEDFYDIKSSKIDDKQISL------------FGIFDGHGGSRAAEYLKEHLFENLMKHPEFMTNTKL------AISETYKKTDSEFLDS---ESHTHRDDGSTASTAVLVGNHLYVANVGDSRAVISKAGKAIALSEDHKPNRSDERKRIE 371          
The following BLAST results are available for this feature:
BLAST of CF417122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
P2C22_ARATH4.354e-2741.04Probable protein phosphatase 2C 22 OS=Arabidopsis ... [more]
P2C59_ARATH1.006e-1536.48Probable protein phosphatase 2C 59 OS=Arabidopsis ... [more]
P2C45_ORYSJ1.716e-1533.96Probable protein phosphatase 2C 45 OS=Oryza sativa... [more]
P2C59_ORYSJ6.521e-1534.13Probable protein phosphatase 2C 59 OS=Oryza sativa... [more]
P2C10_ORYSJ8.517e-1535.95Probable protein phosphatase 2C 10 OS=Oryza sativa... [more]
P2C13_ORYSJ1.453e-1434.64Probable protein phosphatase 2C 13 OS=Oryza sativa... [more]
P2C69_ARATH3.236e-1434.73Probable protein phosphatase 2C 69 OS=Arabidopsis ... [more]
P2C71_ARATH7.210e-1434.73Probable protein phosphatase 2C 71 OS=Arabidopsis ... [more]
P2C11_ARATH2.740e-1332.68Probable protein phosphatase 2C 11 OS=Arabidopsis ... [more]
P2C52_ORYSJ1.041e-1231.41Probable protein phosphatase 2C 52 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-052 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417122 ID=CF417122; Name=CF417122; organism=Citrus sinensis; type=EST; length=659bp
GATCGATGTTAATCTCAAGAACAAGAATAGTAGCCCTCCTTCAACTCCAA
GATTCCATGAACTTCGTGTTTCTGACTCAGTTTCCTCTGAAATCTCCTGT
TTTGAATCGGTTGTCAGTTGTTCAGAGACCGTTAAAAGTACTGCTATGGA
GACTTCGGCAGTGTTTGTCCCAATCATTTGTTCTGGCAGCTGTGCTGACA
TTGGACCAAGGATCTCCATGGATGATGAGCACATTCGGATTGATGATCTA
TCTGCCCACCTTGGATCTCTCTTTAAGTGTCCTACTCCAAGTGCTTTCTA
TGCAGTGTTTGATGGTCATGGTGGACCTGAGGCAGCTGTTTATGTCAAGG
AGAATGCTATGAAATTATTTTTTAAGGATGCTGATATGCCCCAAACATCT
GATATCAATGATGTCTTCTTAGCAGAGTTGGAGAATTCTCATAAGAAAGC
ATTTTTACTGGCAGACCTTGCCTTGGCTGATGAACGTAGTGTTAGTAGTA
CGTGTGGAACAACTGCTCTGACTGCCTTAGTGCTTGGAAGGAATTTACTG
GTTGCAAATGCTGGTGACTGCCGAGCAGTTCTCTGTANAAAAGGAGTTGC
AGTTGATATGTCTCAAGATCATAGGCCTTCCTATCTGCCCGAGCGGAGGC
GAGTTGAGG
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