CF417122

Overview
NameCF417122
Unique NameCF417122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C55_ORYSJ (Probable protein phosphatase 2C 55 OS=Oryza sativa subsp. japonica GN=Os06g0526700 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.776e-12
Identity = 47/128 (36.72%), Postives = 65/128 (50.78%), Query Frame = 2
Query:  293 AFYAVFDGHGGPEAAVYVKENAMK------LFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            + + VFDGHGGP AA Y+K++  K       F KD  +     IN  FL        K           +R      G+TA+ A+++G  L VAN GD RAV    G AV +S+DH+P+   ER+R+E
Sbjct:  152 SLFGVFDGHGGPRAAEYLKKHLFKNLVKHPKFLKDTKLA----INQTFL--------KTDADFLQSISSDRYRDD--GSTAVAAILIGNRLYVANVGDSRAVALKAGKAVPLSEDHKPNKKDERKRIE 265          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C02_ARATH (Probable protein phosphatase 2C 2 OS=Arabidopsis thaliana GN=At1g07160 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 49/152 (32.24%), Postives = 72/152 (47.37%), Query Frame = 2
Query:  203 GPRISMDDEHIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G R +M+D    I +L              A + V+DGHGGP AA +  +N       +    +         +++E + K+           E++V    G+  +TAL+   NL+VANAGDCRAVL   G A  ++ DHRPS   ER R+E
Sbjct:  130 GKREAMEDRFSAITNLQGD--------PKQAIFGVYDGHGGPTAAEFAAKNLCSNILGEIVGGRNE-------SKIEEAVKRGYLATDSEFLKEKNVKG--GSCCVTALISDGNLVVANAGDCRAVLSVGGFAEALTSDHRPSRDDERNRIE 264          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: PP2C3_SCHPO (Protein phosphatase 2C homolog 3 OS=Schizosaccharomyces pombe GN=ptc3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 51/151 (33.77%), Postives = 73/151 (48.34%), Query Frame = 2
Query:  203 GPRISMDDEHIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRV 655
            G RISM+D H  I  LS    ++     P  F+AV+DGHGG + A +   N  ++  K+ D  Q  D  +   +   N+ K            ++  +   G TA   L +G  L  ANAGD R VL  KG+A  +S DH+PS   E+ R+
Sbjct:   31 GWRISMEDAHSAI--LSMECSAV---KDPVDFFAVYDGHGGDKVAKWCGSNLPQILEKNPDF-QKGDFVNALKSSFLNADKAILDD-------DQFHTDPSGCTATVVLRVGNKLYCANAGDSRTVLGSKGIAKPLSADHKPSNEAEKARI 168          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C32_ORYSJ (Probable protein phosphatase 2C 32 OS=Oryza sativa subsp. japonica GN=Os03g0292100 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 51/150 (34.00%), Postives = 67/150 (44.67%), Query Frame = 2
Query:  209 RISMDDEHIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            R+ M+D H+        LG   K     AF+ VFDGHGG  AA +V EN  K   ++       D       E E + K+                  C    +TAL+    L+V+NAGDCRAVL   G A  ++ DHR S   ER R+E
Sbjct:  142 RVEMEDRHVA----KVALGGDPKV----AFFGVFDGHGGKSAAEFVAENMPKFMAEEMCKVDGGDSG-----ETEQAVKRCYLKTDEEFLKREESGGAC---CVTALLQKGGLVVSNAGDCRAVLSRAGKAEALTSDHRASREDERERIE 275          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C25_ARATH (Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 50/152 (32.89%), Postives = 72/152 (47.37%), Query Frame = 2
Query:  203 GPRISMDDEHIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G R +M+D    I +L              A + V+DGHGG +AA +  +N  K   ++    +         +E+  + K            E  V    G+  +TALV   NL+V+NAGDCRAV+   GVA  +S DHRPS   ER+R+E
Sbjct:  147 GRREAMEDRFSAITNLHGD--------RKQAIFGVYDGHGGVKAAEFAAKNLDKNIVEEVVGKRDE-------SEIAEAVKHGYLATDASFLKEEDVKG--GSCCVTALVNEGNLVVSNAGDCRAVMSVGGVAKALSSDHRPSRDDERKRIE 281          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 48/158 (30.38%), Postives = 77/158 (48.73%), Query Frame = 2
Query:  185 GSCADIGPRISMDDEHIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G C+  G R +M+D +   D  ++ +     C      + +FDGHGG  AA Y+KE+      K         + D  LA L  ++K+           E+      G+TA  A+++G +L VAN GD R ++   G A+ +S DH+P+   ER+R+E
Sbjct:  103 GYCSFRGKRSTMEDFY---DIKASTIEGQAVC-----MFGIFDGHGGSRAAEYLKEHLFNNLMKHPQF-----LTDTKLA-LNETYKQTDVAFLES---EKDTYRDDGSTASAAVLVGNHLYVANVGDSRTIVSKAGKAIALSDDHKPNRSDERKRIE 243          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: PP2C4_PARTE (Probable protein phosphatase 2C 4 OS=Paramecium tetraurelia GN=GSPATT00020181001 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.349e-11
Identity = 50/155 (32.26%), Postives = 69/155 (44.52%), Query Frame = 2
Query:  203 GPRISMDDEHIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDA---DMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G R +M+D HI + DL   L          + + VFDGHGG E A +V+++ ++   K+    D      + + FL   E                    +S  G TA  AL     L VANAGD R+VLC      DMS DH+P    E+ R+E
Sbjct:   31 GWRNTMEDAHIHVCDLQQDL----------SIFGVFDGHGGKEVAQFVEKHFIEELQKNKNFKDQKFEDALRETFLKMDELLLTPEGQKEIIQIKGGDDEASYAGCTANVALFHKNVLYVANAGDSRSVLCRNNTNYDMSVDHKPDNYEEKSRIE 175          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: PPM1L_HUMAN (Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 50/157 (31.85%), Postives = 76/157 (48.41%), Query Frame = 2
Query:  203 GPRISMDDEHIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKEN---AMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVS-STCGTTALTALVLGRNLLVANAGDCRAVLCXK-GVAVDMSQDHRPSYLPERRRVE 658
            G R  M+D    + DL+          T  + + +FDGHGG  AA YVK     A+K   +D +  + + +        +   ++           + +VS    GTT L AL+  ++L VAN GD R VLC K G A+ +S DH+P  L ER+R++
Sbjct:  100 GRRDHMEDRFEVLTDLANK--------THPSIFGIFDGHGGETAAEYVKSRLPEALKQHLQDYEKDKENSV-----LSYQTILEQQILSIDREMLEKLTVSYDEAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIK 243          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C75_ARATH (Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana GN=AHG1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 41/141 (29.08%), Postives = 70/141 (49.65%), Query Frame = 2
Query:  287 PSAFYAVFDGHGGPEAAV--------YVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSV---------SSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            P  F+AV+DGHGG + +         +VKE   +   ++ +  +   +   +   ++ S K+             SV         ++  G+TA+TA++   +++VAN GD RAVLC  G+A+ +S DH+P    ER R+E
Sbjct:  141 PVHFFAVYDGHGGSQVSTLCSTTMHTFVKEELEQNLEEEEEGSENDVVERKWRGVMKRSFKRMDEMATSTCVCGTSVPLCNCDPREAAISGSTAVTAVLTHDHIIVANTGDSRAVLCRNGMAIPLSNDHKPDRPDERARIE 281          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C37_ARATH (Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 55/213 (25.82%), Postives = 92/213 (43.19%), Query Frame = 2
Query:   62 LRVSDSVSSEISCFESVVSCSETVKSTAMETSAVFVPIICSGSCADIGPRISMDDEHIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXX--ERSVSSTC------------GTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            L +  +V SE     S V+ S +V     E  + F  +   G+ +  G R  M+D       +S H   L +      FY VFDGHG    A   +E    +  K+ ++  + +  +  +   +   K+              RS+ ++C            G+TA+ ++V    ++V+N GD RAVLC  GVA+ +S DH+P    E  R++
Sbjct:   69 LDLDSNVRSENKKARSAVTNSNSVT----EAESFFSDVPKIGTTSVCGRRRDMEDA------VSIHPSFLQRNSENHHFYGVFDGHGCSHVAEKCRERLHDIVKKEVEVMASDEWTETMVKSFQKMDKEVSQRECNLVVNGATRSMKNSCRCELQSPQCDAVGSTAVVSVVTPEKIIVSNCGDSRAVLCRNGVAIPLSVDHKPDRPDELIRIQ 271          
The following BLAST results are available for this feature:
BLAST of CF417122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
P2C55_ORYSJ1.776e-1236.72Probable protein phosphatase 2C 55 OS=Oryza sativa... [more]
P2C02_ARATH2.319e-1232.24Probable protein phosphatase 2C 2 OS=Arabidopsis t... [more]
PP2C3_SCHPO3.956e-1233.77Protein phosphatase 2C homolog 3 OS=Schizosaccharo... [more]
P2C32_ORYSJ1.151e-1134.00Probable protein phosphatase 2C 32 OS=Oryza sativa... [more]
P2C25_ARATH1.503e-1132.89Probable protein phosphatase 2C 25 OS=Arabidopsis ... [more]
P2C76_ARATH2.564e-1130.38Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]
PP2C4_PARTE3.349e-1132.26Probable protein phosphatase 2C 4 OS=Paramecium te... [more]
PPM1L_HUMAN4.374e-1131.85Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE... [more]
P2C75_ARATH4.374e-1129.08Probable protein phosphatase 2C 75 OS=Arabidopsis ... [more]
P2C37_ARATH4.374e-1125.82Protein phosphatase 2C 37 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-052 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417122 ID=CF417122; Name=CF417122; organism=Citrus sinensis; type=EST; length=659bp
GATCGATGTTAATCTCAAGAACAAGAATAGTAGCCCTCCTTCAACTCCAA
GATTCCATGAACTTCGTGTTTCTGACTCAGTTTCCTCTGAAATCTCCTGT
TTTGAATCGGTTGTCAGTTGTTCAGAGACCGTTAAAAGTACTGCTATGGA
GACTTCGGCAGTGTTTGTCCCAATCATTTGTTCTGGCAGCTGTGCTGACA
TTGGACCAAGGATCTCCATGGATGATGAGCACATTCGGATTGATGATCTA
TCTGCCCACCTTGGATCTCTCTTTAAGTGTCCTACTCCAAGTGCTTTCTA
TGCAGTGTTTGATGGTCATGGTGGACCTGAGGCAGCTGTTTATGTCAAGG
AGAATGCTATGAAATTATTTTTTAAGGATGCTGATATGCCCCAAACATCT
GATATCAATGATGTCTTCTTAGCAGAGTTGGAGAATTCTCATAAGAAAGC
ATTTTTACTGGCAGACCTTGCCTTGGCTGATGAACGTAGTGTTAGTAGTA
CGTGTGGAACAACTGCTCTGACTGCCTTAGTGCTTGGAAGGAATTTACTG
GTTGCAAATGCTGGTGACTGCCGAGCAGTTCTCTGTANAAAAGGAGTTGC
AGTTGATATGTCTCAAGATCATAGGCCTTCCTATCTGCCCGAGCGGAGGC
GAGTTGAGG
back to top