CF417122

Overview
NameCF417122
Unique NameCF417122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: PPM1L_MOUSE (Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 50/157 (31.85%), Postives = 76/157 (48.41%), Query Frame = 2
Query:  203 GPRISMDDEHIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKEN---AMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVS-STCGTTALTALVLGRNLLVANAGDCRAVLCXK-GVAVDMSQDHRPSYLPERRRVE 658
            G R  M+D    + DL+          T  + + +FDGHGG  AA YVK     A+K   +D +  + + +        +   ++           + +VS    GTT L AL+  ++L VAN GD R VLC K G A+ +S DH+P  L ER+R++
Sbjct:  100 GRRDHMEDRFEVLTDLANK--------THPSIFGIFDGHGGETAAEYVKSRLPEALKQHLQDYEKDKENSV-----LTYQTILEQQILSIDREMLEKLTVSYDEAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIK 243          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: PPM1L_BOVIN (Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 44/130 (33.85%), Postives = 67/130 (51.54%), Query Frame = 2
Query:  284 TPSAFYAVFDGHGGPEAAVYVKEN---AMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVS-STCGTTALTALVLGRNLLVANAGDCRAVLCXK-GVAVDMSQDHRPSYLPERRRVE 658
            T  + + +FDGHGG  AA YVK     A+K   +D +  + + +        +   ++           + +VS    GTT L AL+  ++L VAN GD R VLC K G A+ +S DH+P  L ER+R++
Sbjct:  119 THPSIFGIFDGHGGETAAEYVKSRLPEALKQHLQDYEKDKENSV-----LSYQTILEQQILSIDREMLEKLTVSYDEAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIK 243          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: PP2C6_PARTE (Probable protein phosphatase 2C 6 OS=Paramecium tetraurelia GN=GSPATT00019634001 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 44/138 (31.88%), Postives = 67/138 (48.55%), Query Frame = 2
Query:  254 AHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTS---DINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            AH+  L   P    F AVFDGHGG E A++ + +  +   K+ +  Q +    + + F    +   +                +S  G TA  AL++G+ L VANAGD R+ L   G   DMS+DH+P    E++R+E
Sbjct:   39 AHISDLNIEPDVHLF-AVFDGHGGSEVAIFAERHFREELMKNKNYQQKNYEKALTETFFKIDKMLQEPSGLDELNKIRGVTDEASLAGCTANVALIVGKTLYVANAGDSRSFLNRDGKPFDMSKDHKPDDEQEKKRIE 175          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: PP2C5_PARTE (Probable protein phosphatase 2C 5 OS=Paramecium tetraurelia GN=GSPATT00010582001 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 45/155 (29.03%), Postives = 73/155 (47.10%), Query Frame = 2
Query:  203 GPRISMDDEHIRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTS---DINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G R +M+D HI   ++   +            +AVFDGHGG E A++ + +  +   K+ +  Q +    + + F    +   +                +S  G TA  AL++G+ L VANAGD R+ L   G   DMS+DH+P    E++R+E
Sbjct:   31 GWRNTMEDAHISDMNIEPDVH----------LFAVFDGHGGSEVAIFAERHFREELMKNKNYQQKNYEKALTETFFKIDKMLQEPSGQDELNKIRGVNDETSLAGCTANVALIVGKTLYVANAGDSRSFLNRDGKPFDMSKDHKPDDDQEKKRIE 175          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C07_ORYSJ (Probable protein phosphatase 2C 7 OS=Oryza sativa subsp. japonica GN=Os01g0618200 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 40/120 (33.33%), Postives = 62/120 (51.67%), Query Frame = 2
Query:  299 YAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            + +FDGHGG  AA ++K++  +   K       S I D   A  E   K            E +++   G+TA TA+ +G ++ VAN GD R V+   G A+ +S DH+P+   ER+R+E
Sbjct:  147 FGIFDGHGGSHAAEHLKKHLFENLLK-----HPSFITDTKSAISETYRKTDSDFLDA----ETNINREDGSTASTAIFVGNHIYVANVGDSRTVMSKAGKAIALSSDHKPNRKDERKRIE 257          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C56_ORYSJ (Probable protein phosphatase 2C 56 OS=Oryza sativa subsp. japonica GN=Os06g0526800/Os06g0526950 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 55/157 (35.03%), Postives = 79/157 (50.32%), Query Frame = 2
Query:  203 GPRISMDDEH-IRIDDLSAHLGSLFKCPTPSAFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTC----GTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            G R SM+D   I++  ++    SLF          VFDGHGG  AA Y+KE+   LF    + P+   + D  LA  +   K              SVSS      G+TA+TA+++G +L V N GD R V    G AV +S+DH+P+   E++R+E
Sbjct:  104 GRRPSMEDRFSIKMTTINEQTVSLF---------GVFDGHGGSLAAEYLKEH---LFENLVNHPEL--LRDTKLAISQTFLKTDADFL-------ESVSSNPFRDDGSTAVTAILVGNHLYVGNVGDSRVVALKAGKAVPLSEDHKPNRKDEQKRIE 239          
BLAST of CF417122 vs. ExPASy Swiss-Prot
Match: P2C14_ARATH (Probable protein phosphatase 2C 14 OS=Arabidopsis thaliana GN=At1g67820 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 39/122 (31.97%), Postives = 62/122 (50.82%), Query Frame = 2
Query:  293 AFYAVFDGHGGPEAAVYVKENAMKLFFKDADMPQTSDINDVFLAELENSHKKXXXXXXXXXXXERSVSSTCGTTALTALVLGRNLLVANAGDCRAVLCXKGVAVDMSQDHRPSYLPERRRVE 658
            +F+ V+DGHGG +AA +V EN  K   +  +  +  +       E   + K            +  VS  C    +TA++  + ++V+N GDCRAVLC  GVA  ++ DH+P    E+ R+E
Sbjct:  150 SFFGVYDGHGGAKAAEFVAENLHKYVVEMMENCKGKE-------EKVEAFKAAFLRTDRDFLEKGVVSGAC---CVTAVIQDQEMIVSNLGDCRAVLCRAGVAEALTDDHKPGRDDEKERIE 261          
The following BLAST results are available for this feature:
BLAST of CF417122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PPM1L_MOUSE5.713e-1131.85Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE... [more]
PPM1L_BOVIN5.713e-1133.85Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2... [more]
PP2C6_PARTE5.713e-1131.88Probable protein phosphatase 2C 6 OS=Paramecium te... [more]
PP2C5_PARTE5.713e-1129.03Probable protein phosphatase 2C 5 OS=Paramecium te... [more]
P2C07_ORYSJ7.461e-1133.33Probable protein phosphatase 2C 7 OS=Oryza sativa ... [more]
P2C56_ORYSJ9.744e-1135.03Probable protein phosphatase 2C 56 OS=Oryza sativa... [more]
P2C14_ARATH9.744e-1131.97Probable protein phosphatase 2C 14 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-052 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417122 ID=CF417122; Name=CF417122; organism=Citrus sinensis; type=EST; length=659bp
GATCGATGTTAATCTCAAGAACAAGAATAGTAGCCCTCCTTCAACTCCAA
GATTCCATGAACTTCGTGTTTCTGACTCAGTTTCCTCTGAAATCTCCTGT
TTTGAATCGGTTGTCAGTTGTTCAGAGACCGTTAAAAGTACTGCTATGGA
GACTTCGGCAGTGTTTGTCCCAATCATTTGTTCTGGCAGCTGTGCTGACA
TTGGACCAAGGATCTCCATGGATGATGAGCACATTCGGATTGATGATCTA
TCTGCCCACCTTGGATCTCTCTTTAAGTGTCCTACTCCAAGTGCTTTCTA
TGCAGTGTTTGATGGTCATGGTGGACCTGAGGCAGCTGTTTATGTCAAGG
AGAATGCTATGAAATTATTTTTTAAGGATGCTGATATGCCCCAAACATCT
GATATCAATGATGTCTTCTTAGCAGAGTTGGAGAATTCTCATAAGAAAGC
ATTTTTACTGGCAGACCTTGCCTTGGCTGATGAACGTAGTGTTAGTAGTA
CGTGTGGAACAACTGCTCTGACTGCCTTAGTGCTTGGAAGGAATTTACTG
GTTGCAAATGCTGGTGACTGCCGAGCAGTTCTCTGTANAAAAGGAGTTGC
AGTTGATATGTCTCAAGATCATAGGCCTTCCTATCTGCCCGAGCGGAGGC
GAGTTGAGG
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