CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BRUO2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dxs PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.803e-37
Identity = 81/132 (61.36%), Postives = 95/132 (71.97%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398
            GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TV DARF KPLDH LIR LA+ HEVL+ VEEG++GGFGSHV+QFLA DGLLD  +K R L LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  496 GKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVVDARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BRUAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus GN=dxs PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.355e-37
Identity = 81/132 (61.36%), Postives = 96/132 (72.73%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398
            GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TVADARF KPLDH LIR LA+ HEVL+ VEEG++GGF SHV+QFLA DGLLD  +K R L+LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  496 GKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFSSHVLQFLATDGLLDRGLKVRALMLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BRUA1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus (strain S19) GN=dxs PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.355e-37
Identity = 81/132 (61.36%), Postives = 96/132 (72.73%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398
            GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TVADARF KPLDH LIR LA+ HEVL+ VEEG++GGF SHV+QFLA DGLLD  +K R L+LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  496 GKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFSSHVLQFLATDGLLDRGLKVRALMLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHIME (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium meliloti GN=dxs PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.076e-37
Identity = 76/134 (56.72%), Postives = 100/134 (74.63%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGRI+ +G +VALL +GT +  CL A+  L++ GL  TVADARF KPLDH LIR LA+ HEVLIT+EEG++GGF SHV+QFLA +GL+DG +K RP+V+PD +++   P    A+AGL  + I +TVF  LGQ
Sbjct:  502 GKGRIVKQGNKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEVLITIEEGAVGGFASHVLQFLAEEGLIDGGLKVRPMVMPDIWMEQAKPEAMYARAGLDRAGIVSTVFKALGQ 635          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BRUA2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus (strain 2308) GN=dxs PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.853e-37
Identity = 80/132 (60.61%), Postives = 95/132 (71.97%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398
            GKGRI+ EG +VALL +GT +Q CLAA+  L + GL  TVADARF KPLDH LIR L + HEVL+ VEEG++GGF SHV+QFLA DGLLD  +K R L+LPD Y DHG P    A+AGL  + I  TVF  L
Sbjct:  496 GKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLVREHEVLVMVEEGAVGGFSSHVLQFLATDGLLDRGLKVRALMLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAAL 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_MESSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhizobium sp. (strain BNC1) GN=dxs PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.169e-36
Identity = 78/138 (56.52%), Postives = 98/138 (71.01%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 416
            GKGRI+ EG ++ALL  GT +  C+ A+  LE+ GL  TVADARF KPLD  LIR LA+ HEVL+TVEEGSIGGFG+HV+ FLA +GLL+  +K RPLV+PD ++D   P    A+AGL  + I  TVF  LGQ  +A
Sbjct:  510 GKGRIVREGSKIALLSLGTRLADCMIAAEELEAAGLSTTVADARFAKPLDADLIRRLAREHEVLVTVEEGSIGGFGAHVLHFLAHEGLLENGLKVRPLVMPDIFMDQAKPEKMYAKAGLDAAGIVKTVFAALGQAEQA 647          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHIL3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxs PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.577e-36
Identity = 77/134 (57.46%), Postives = 97/134 (72.39%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGRI+ EG +VALL +GT +  CL A+  L++ GL  TVADARF KPLDH LIR LA+ HE++ITVEEGSIGGFGSHV+ FLA +GLLD  +K R LV+PD +++   P    A AGL  + I +TVF  LG+
Sbjct:  497 GKGRIVKEGTKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEMVITVEEGSIGGFGSHVMHFLATEGLLDNGLKLRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFKALGR 630          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BRASO (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain ORS278) GN=dxs PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.292e-35
Identity = 72/134 (53.73%), Postives = 97/134 (72.39%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR++ +G++VALL +GT +  C  A+  L +HGL  ++ADARF KPLD  L+  LA+ HE+LIT+EEGSIGGFGSHV+Q+LA  G+LDG +K R +VLPD + DH +PA   A+AGL    I   VF +LG+
Sbjct:  498 GKGRMIRQGKQVALLSFGTRLAECEKAADELAAHGLSASIADARFMKPLDEELVLKLARDHEILITIEEGSIGGFGSHVMQYLADQGMLDGGLKMRSMVLPDEFQDHDTPAAMYARAGLDAKGIVRKVFEVLGK 631          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_AGRT5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dxs PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.204e-35
Identity = 76/134 (56.72%), Postives = 95/134 (70.90%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGRI+ EG +VALL +GT +  CLAA+  L++ GL  TVADARF KPLD  LIR LA  HEVL+T+EEGS+GGFG+HV+ F+A  GLLD   K R L LPD++++   P    A AGL  + I +TVFN LGQ
Sbjct:  497 GKGRIIKEGTKVALLSFGTRLAECLAAAEDLDAAGLSTTVADARFAKPLDLDLIRQLAAHHEVLVTIEEGSVGGFGAHVLHFMASAGLLDHGPKVRTLTLPDQWVEQAKPETMYANAGLDRAGIVSTVFNALGQ 630          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHIE6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CIAT 652) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.760e-35
Identity = 76/134 (56.72%), Postives = 97/134 (72.39%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGRI+ EG +VALL +GT +  CL A+  LE+ GL  TVADARF KPLDH LIR LA+ HE+LITVEEGS+GGFGS V+Q+L+ +GLLD  +K R LV+PD +++   P    A AGL  + I +TVF  LG+
Sbjct:  497 GKGRIVKEGTKVALLSFGTRLADCLLAAEDLEAAGLSTTVADARFAKPLDHDLIRQLARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALGR 630          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_BRUO21.803e-3761.361-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUAB2.355e-3761.361-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUA12.355e-3761.361-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_RHIME3.076e-3756.721-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_BRUA26.853e-3760.611-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_MESSB1.169e-3656.521-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhi... [more]
DXS_RHIL37.577e-3657.461-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_BRASO1.292e-3553.731-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_AGRT52.204e-3556.721-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_RHIE63.760e-3556.721-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
back to top