CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BORPE (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella pertussis GN=dxs PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.875e-18
Identity = 57/129 (44.19%), Postives = 77/129 (59.69%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +  EG R+A+LG+GT VQ+ L A+  +++      VAD RF KPLD  L+  LA  H+ L+TVEE +I GG GS V++ LA  G+   T+    L LPD +IDHG  A  LA  GL  + I   +
Sbjct:  491 GKGLVRREGRRIAILGFGTLVQAALGAAGQIDA-----MVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGSAVLETLAEAGV---TLPVLQLGLPDAFIDHGDQAALLAGLGLDAAGIERAI 611          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_VIBVY (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-18
Identity = 54/135 (40.00%), Postives = 82/135 (60.74%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR++ +GE+VA+L +GT +     A+AL  +  L  TVAD RF KPLD ALIR LA  H+VLIT+EE +I GG G+ V++F+  + ++   +    L LPD++I  G+  +   + GL    I   + + L +
Sbjct:  495 GKGRLVRQGEKVAILSFGTFL-----ANALEAAEALNATVADMRFVKPLDEALIRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIMKPVLN---LGLPDKFIHQGTQEELHEELGLDAKGIEQAIRHYLAK 621          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SYNJB (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-18
Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GK  +L  G  V +L YG+ V   L A+ +L+ HG+  TV +ARF KPLD  LI  LA+   +++TVEEG + GGFGS V + L LD   D  V    L +PD +++H +P + LA+ GL  + IA  +
Sbjct:  502 GKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISATVVNARFAKPLDTELILPLAEQSRLVVTVEEGCLMGGFGSAVAEAL-LDA--DLAVPLLRLGVPDVWVEHATPEESLAELGLNSAGIAERI 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RALEJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-18
Identity = 56/121 (46.28%), Postives = 76/121 (62.81%), Query Frame = 3
Query:   27 GERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            G+RVA LG+G+ V   L A+  L++     +VAD RF KPLD  L++ LA+ H  L+TVEEGS+ GG GS V++ LA  G+    +    L LPDR+IDHG PA  L+Q GL  + I  +V
Sbjct:  508 GQRVAFLGFGSMVHPALGAAQALDA-----SVADMRFVKPLDVELVKRLAEEHNYLVTVEEGSVMGGAGSAVLEALAEAGI---DIPVLVLGLPDRFIDHGDPALLLSQCGLDAAGIERSV 620          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEPG (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain GB-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-18
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +  +GE++ALL +G  +     A A+  +  +  TV D RF KPLD AL+  LA SHE+L+T+EE +I GG G+ V +FLA   +L   +    L LPD Y++H  PA  LA+ GL  + I A+V
Sbjct:  502 GKGVVRRQGEKIALLVFGVQL-----AEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVLKPLLH---LGLPDIYVEHAKPAQMLAECGLDAAGIEASV 622          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CUPTR (1-deoxy-D-xylulose-5-phosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-18
Identity = 62/134 (46.27%), Postives = 80/134 (59.70%), Query Frame = 3
Query:    3 GKGRILIE-----GERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +  E     G RV  L +G+ VQ  L A+  L++     TVAD RF KPLD AL++ LA  H+ L+TVEEGS+ GG GS V++ LA  G +D  V    L LPDR++DHG PA  L Q GL  + I  +V
Sbjct:  495 GKGVVRREAGARAGHRVGFLAFGSMVQPALGAAEALDA-----TVADMRFVKPLDVALVKRLAADHDYLVTVEEGSVMGGAGSAVLEALAEAG-IDKPV--LTLGLPDRFVDHGDPAFLLQQCGLDAAGIERSV 620          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURXL (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia xenovorans (strain LB400) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-18
Identity = 58/134 (43.28%), Postives = 80/134 (59.70%), Query Frame = 3
Query:    3 GKGRILIE-----GERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG I  E     G+R+A+L +GT V   LAA+  L++     TVA+ RF KPLD  L+R LA++H+ ++TVEEG + GG GS  V+ L   G+    ++   L LPDR+IDHG PA  LA  GL    I  ++
Sbjct:  490 GKGEIRRETSQPAGKRIAILAFGTMVAPSLAAAEQLDA-----TVANMRFVKPLDADLVRQLAETHDAIVTVEEGCVMGGAGSACVEALLASGVTRPVLQ---LGLPDRFIDHGDPAKLLAACGLDAVGITKSI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BORA1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella avium (strain 197N) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-18
Identity = 57/129 (44.19%), Postives = 79/129 (61.24%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +   G R+A++G+GT V + LAA+  L++     TVAD RF KPLD  L+R LA +HE L+T+E+ ++ GG GS V + L + GL   T+    L LPD +IDHG  A  LA  GL  + I  +V
Sbjct:  491 GKGVVRRRGARIAIMGFGTLVPAALAAAEKLDA-----TVADMRFVKPLDVELLRELAATHEALVTLEDAAVMGGAGSAVTEALNMAGL---TLPVLQLGLPDVFIDHGDQAALLAGVGLDAAGIERSV 611          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ANAVT (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-18
Identity = 55/129 (42.64%), Postives = 77/129 (59.69%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG IL  G+ V ++GYGT V   + A+ +L  HG+  TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V + L LD   D  V  + + +PD  ++H +P +  A+ GLT   IA  V
Sbjct:  497 GKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVAEAL-LDA--DVVVPVKRIGIPDVLVEHATPDESKAELGLTSRQIAERV 622          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ANASP (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-18
Identity = 55/129 (42.64%), Postives = 77/129 (59.69%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG IL  G+ V ++GYGT V   + A+ +L  HG+  TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V + L LD   D  V  + + +PD  ++H +P +  A+ GLT   IA  V
Sbjct:  497 GKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVAEAL-LDA--DVVVPVKRIGIPDVLVEHATPDESKAELGLTSRQIAERV 622          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_BORPE1.875e-1844.191-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_VIBVY2.449e-1840.001-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_SYNJB2.449e-1841.861-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_RALEJ2.449e-1846.281-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_PSEPG2.449e-1842.641-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_CUPTR2.449e-1846.271-deoxy-D-xylulose-5-phosphate synthase OS=Cupriav... [more]
DXS_BURXL2.449e-1843.281-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BORA12.449e-1844.191-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_ANAVT2.449e-1842.641-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_ANASP2.449e-1842.641-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
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