CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_THEEB (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=dxs PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.198e-18
Identity = 53/139 (38.13%), Postives = 79/139 (56.83%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 416
            GKG +L  GE + L+ YG+ V   +  + +L+ HG+   V +ARF KPLD  LI  LAK    ++T+EEG + GGFGS V++ L    +L   ++   L +PD  ++H SP +  A  GLTP  +A T+    G  + A
Sbjct:  497 GKGELLRSGEDLLLVAYGSMVYPAMQVAEILKEHGMSAAVINARFAKPLDTELILPLAKQIGRVVTLEEGCLMGGFGSAVLEALQEADILVPVLR---LGVPDILVEHASPDESKADLGLTPPQMAETIMQKFGVPQRA 632          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SYNSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9605) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.198e-18
Identity = 51/136 (37.50%), Postives = 78/136 (57.35%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 407
            G+G +L EG+ + ++ YG+ V   LA + LLE  GL  TV +ARF +PLD ALI  LA+    ++T+EEG++ GGFG+ V++ L      D  V    + +PD+ +DH +P       GLTP+ +A  +      T
Sbjct:  496 GRGELLREGDDLMIVAYGSMVAPALATATLLEEAGLSTTVINARFLRPLDQALIHPLARRIPRVVTMEEGALPGGFGAAVLESLTDQ---DINVSMLRIGIPDKLVDHATPQQSKEALGLTPAQMAERILERFSNT 628          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_VIBVU (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18
Identity = 53/135 (39.26%), Postives = 82/135 (60.74%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR++ +GE+VA+L +GT +     A+AL  +  L  TVAD RF KPLD AL+R LA  H+VLIT+EE +I GG G+ V++F+  + ++   +    L LPD++I  G+  +   + GL    I   + + L +
Sbjct:  495 GKGRLVRQGEKVAILSFGTFL-----ANALEAAEALNATVADMRFVKPLDEALLRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIMKPVLN---LGLPDKFIHQGTQEELHEELGLDAKGIEQAIRHYLAK 621          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_VIBHB (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18
Identity = 54/135 (40.00%), Postives = 81/135 (60.00%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGRI+ +GE+VA+L +GT + + L A+       L  TVAD RF KPLD ALIR LA  H+VL+T+EE +I GG G+ V++F+  D ++   +    L LPDR++  G+  +     GL    I  ++ + L +
Sbjct:  495 GKGRIVRKGEKVAILSFGTFLGNALEAA-----ENLNATVADMRFVKPLDEALIRQLAAEHDVLVTLEENAIAGGAGAGVIEFMMQDKIIKPVLN---LGLPDRFVPQGTQDELHEDLGLDAKGIEKSINDYLAK 621          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SYNP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18
Identity = 54/129 (41.86%), Postives = 74/129 (57.36%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG IL  G+ + L+GYG  V S L  + +L  HG+  TV +ARF KPLD  LI  LAK    + T EEG + GGFGS V + L    +L   V  +   + D  +DH +PA+  A  GLTP+ +A ++
Sbjct:  497 GKGEILRNGDDILLIGYGAMVHSTLQVAEILSEHGISATVINARFVKPLDSELIAPLAKQIGKVATFEEGCLMGGFGSAVCEALQDHDVL---VPVKRFGIGDVLVDHATPAESKAAHGLTPAQMAESI 622          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEMY (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas mendocina (strain ymp) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18
Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTR 410
            GK  +  +G+  ALL +G  +     A AL     L  TV D RF KPLD AL+R LA SHE+L+T+EE ++ GG GS V +FLA   ++   +    L LPD Y++H  PA  LA+ GL  + I   V   L Q R
Sbjct:  502 GKAIVRRQGKGAALLVFGVQL-----AEALQVGEALNATVVDMRFVKPLDEALLRELAGSHELLVTIEENAVMGGAGSAVSEFLAAQNIIKPLLH---LGLPDYYVEHAKPAQMLAECGLDQAGIERAVRERLDQLR 630          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PROMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18
Identity = 47/129 (36.43%), Postives = 80/129 (62.02%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            G+G +L EG+ + ++ YG  V + +  + LL+  G++ TV +ARF +PLD ALI  LA+    ++T+EEG++ GGFG+ VV+ L+   +L  T +   + +PD+ +DH SP       GLTP+ ++  +
Sbjct:  496 GRGEVLCEGDDLLIVAYGVMVPAAMITAQLLQEAGIKATVINARFLRPLDQALIHPLARRIGSVVTMEEGALAGGFGAAVVESLSDQDVLVPTFR---IGIPDQLVDHASPQQSREALGLTPTQMSERI 621          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18
Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 3
Query:   24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            +G+RVA+L +GT V   LAA+  L++     TVA+ RF KP+D  L+R LA++H+ L+TVEEG + GG GS  V+ +   G +   ++   L LPDR++DHG PA  LA  GL    IA ++
Sbjct:  502 DGKRVAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVRELAQTHDYLVTVEEGCVMGGAGSACVEAMMEGGAVRPVLQ---LGLPDRFVDHGDPAKLLAMCGLDGDGIAKSI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEFS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.455e-18
Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +  +G + A L +G  +     A AL  +  +  TV D RF KPLD AL+R +A  HE+L+TVEE +I GG G+ V +FLA + +L   +    L LPD Y++H  PA  LA+ GL  + I A+V
Sbjct:  503 GKGIVRRQGSKTAFLVFGVQL-----AEALKVAEKIDATVVDMRFVKPLDEALVREIAGGHELLVTVEENAIMGGAGAAVSEFLARENILKSVLH---LGLPDVYVEHAKPAQMLAECGLDEAGIEASV 623          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_METPP (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylibium petroleiphilum (strain PM1) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.455e-18
Identity = 58/142 (40.85%), Postives = 82/142 (57.75%), Query Frame = 3
Query:    3 GKGRILIE----GERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTRE 413
            G+G +  E    G R+A+L +GT +   LAA+  L++     TVA+ RF KPLD  L+ SLA+SHE L+TVEEG + GG GS V++ L   G+    +    L LPD +++HG PA  LAQ GL  + I  ++    G   E
Sbjct:  490 GRGELRREARGGGRRIAILAFGTLLYPALAAAEKLDA-----TVANMRFIKPLDTELVLSLARSHEALVTVEEGCLQGGAGSAVLEALQAAGV---NLPVLTLGLPDEFVEHGDPAKLLAQLGLDAAGIEQSILKRFGAKLE 623          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_THEEB3.198e-1838.131-deoxy-D-xylulose-5-phosphate synthase OS=Thermos... [more]
DXS_SYNSC3.198e-1837.501-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_VIBVU4.177e-1839.261-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_VIBHB4.177e-1840.001-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_SYNP24.177e-1841.861-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_PSEMY4.177e-1841.611-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PROMM4.177e-1836.431-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_BURTA4.177e-1843.441-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_PSEFS5.455e-1841.861-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_METPP5.455e-1840.851-deoxy-D-xylulose-5-phosphate synthase OS=Methyli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
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