CF417125
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_THEEB (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=dxs PE=3 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 3.198e-18 Identity = 53/139 (38.13%), Postives = 79/139 (56.83%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 416 GKG +L GE + L+ YG+ V + + +L+ HG+ V +ARF KPLD LI LAK ++T+EEG + GGFGS V++ L +L ++ L +PD ++H SP + A GLTP +A T+ G + A Sbjct: 497 GKGELLRSGEDLLLVAYGSMVYPAMQVAEILKEHGMSAAVINARFAKPLDTELILPLAKQIGRVVTLEEGCLMGGFGSAVLEALQEADILVPVLR---LGVPDILVEHASPDESKADLGLTPPQMAETIMQKFGVPQRA 632
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SYNSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9605) GN=dxs PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.198e-18 Identity = 51/136 (37.50%), Postives = 78/136 (57.35%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 407 G+G +L EG+ + ++ YG+ V LA + LLE GL TV +ARF +PLD ALI LA+ ++T+EEG++ GGFG+ V++ L D V + +PD+ +DH +P GLTP+ +A + T Sbjct: 496 GRGELLREGDDLMIVAYGSMVAPALATATLLEEAGLSTTVINARFLRPLDQALIHPLARRIPRVVTMEEGALPGGFGAAVLESLTDQ---DINVSMLRIGIPDKLVDHATPQQSKEALGLTPAQMAERILERFSNT 628
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_VIBVU (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus GN=dxs PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18 Identity = 53/135 (39.26%), Postives = 82/135 (60.74%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404 GKGR++ +GE+VA+L +GT + A+AL + L TVAD RF KPLD AL+R LA H+VLIT+EE +I GG G+ V++F+ + ++ + L LPD++I G+ + + GL I + + L + Sbjct: 495 GKGRLVRQGEKVAILSFGTFL-----ANALEAAEALNATVADMRFVKPLDEALLRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIMKPVLN---LGLPDKFIHQGTQEELHEELGLDAKGIEQAIRHYLAK 621
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_VIBHB (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=dxs PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18 Identity = 54/135 (40.00%), Postives = 81/135 (60.00%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404 GKGRI+ +GE+VA+L +GT + + L A+ L TVAD RF KPLD ALIR LA H+VL+T+EE +I GG G+ V++F+ D ++ + L LPDR++ G+ + GL I ++ + L + Sbjct: 495 GKGRIVRKGEKVAILSFGTFLGNALEAA-----ENLNATVADMRFVKPLDEALIRQLAAEHDVLVTLEENAIAGGAGAGVIEFMMQDKIIKPVLN---LGLPDRFVPQGTQDELHEDLGLDAKGIEKSINDYLAK 621
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SYNP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dxs PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18 Identity = 54/129 (41.86%), Postives = 74/129 (57.36%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG IL G+ + L+GYG V S L + +L HG+ TV +ARF KPLD LI LAK + T EEG + GGFGS V + L +L V + + D +DH +PA+ A GLTP+ +A ++ Sbjct: 497 GKGEILRNGDDILLIGYGAMVHSTLQVAEILSEHGISATVINARFVKPLDSELIAPLAKQIGKVATFEEGCLMGGFGSAVCEALQDHDVL---VPVKRFGIGDVLVDHATPAESKAAHGLTPAQMAESI 622
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEMY (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas mendocina (strain ymp) GN=dxs PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18 Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTR 410 GK + +G+ ALL +G + A AL L TV D RF KPLD AL+R LA SHE+L+T+EE ++ GG GS V +FLA ++ + L LPD Y++H PA LA+ GL + I V L Q R Sbjct: 502 GKAIVRRQGKGAALLVFGVQL-----AEALQVGEALNATVVDMRFVKPLDEALLRELAGSHELLVTIEENAVMGGAGSAVSEFLAAQNIIKPLLH---LGLPDYYVEHAKPAQMLAECGLDQAGIERAVRERLDQLR 630
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PROMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=dxs PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18 Identity = 47/129 (36.43%), Postives = 80/129 (62.02%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 G+G +L EG+ + ++ YG V + + + LL+ G++ TV +ARF +PLD ALI LA+ ++T+EEG++ GGFG+ VV+ L+ +L T + + +PD+ +DH SP GLTP+ ++ + Sbjct: 496 GRGEVLCEGDDLLIVAYGVMVPAAMITAQLLQEAGIKATVINARFLRPLDQALIHPLARRIGSVVTMEEGALAGGFGAAVVESLSDQDVLVPTFR---IGIPDQLVDHASPQQSREALGLTPTQMSERI 621
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dxs PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18 Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 3 Query: 24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 +G+RVA+L +GT V LAA+ L++ TVA+ RF KP+D L+R LA++H+ L+TVEEG + GG GS V+ + G + ++ L LPDR++DHG PA LA GL IA ++ Sbjct: 502 DGKRVAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVRELAQTHDYLVTVEEGCVMGGAGSACVEAMMEGGAVRPVLQ---LGLPDRFVDHGDPAKLLAMCGLDGDGIAKSI 615
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEFS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=dxs PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 5.455e-18 Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + +G + A L +G + A AL + + TV D RF KPLD AL+R +A HE+L+TVEE +I GG G+ V +FLA + +L + L LPD Y++H PA LA+ GL + I A+V Sbjct: 503 GKGIVRRQGSKTAFLVFGVQL-----AEALKVAEKIDATVVDMRFVKPLDEALVREIAGGHELLVTVEENAIMGGAGAAVSEFLARENILKSVLH---LGLPDVYVEHAKPAQMLAECGLDEAGIEASV 623
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_METPP (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylibium petroleiphilum (strain PM1) GN=dxs PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 5.455e-18 Identity = 58/142 (40.85%), Postives = 82/142 (57.75%), Query Frame = 3 Query: 3 GKGRILIE----GERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTRE 413 G+G + E G R+A+L +GT + LAA+ L++ TVA+ RF KPLD L+ SLA+SHE L+TVEEG + GG GS V++ L G+ + L LPD +++HG PA LAQ GL + I ++ G E Sbjct: 490 GRGELRREARGGGRRIAILAFGTLLYPALAAAEKLDA-----TVANMRFIKPLDTELVLSLARSHEALVTVEEGCLQGGAGSAVLEALQAAGV---NLPVLTLGLPDEFVEHGDPAKLLAQLGLDAAGIEQSILKRFGAKLE 623 The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 386
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bpback to top |