CF417125
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BORPD (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=dxs PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 5.455e-18 Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + +G +A+L +GT Q+ LAA+ L++ TVAD RF KP+D LI LA H+ ++TVEE +I GG GS V++ L +G++ V L LPDR+IDHG A LA GL + I ++ Sbjct: 491 GKGIVRRQGRGIAILAFGTLTQAALAAAEALDA-----TVADMRFVKPIDRELILQLAAGHDAIVTVEEAAIMGGAGSAVIEVLHHEGVV---VPVLQLGLPDRFIDHGDQAALLAGLGLDAAGIERSI 611
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. tomato GN=dxs PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 7.124e-18 Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + +G+ VA+L +G + A AL+ + L TV D RF KPLD AL+R A SHE+L+T+EE ++ GG G+ V +FLA +L + L LPD Y++H PA LA+ GL I A + Sbjct: 503 GKGVVRRQGQGVAILVFGVQL-----AEALVVAEKLDATVIDMRFVKPLDEALVRETAASHELLVTLEENAVMGGAGAAVSEFLARANILKSVLH---LGLPDVYVEHAKPAQMLAECGLDAEGIEAAI 623
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PROM3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=dxs PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 7.124e-18 Identity = 47/129 (36.43%), Postives = 80/129 (62.02%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 G+G +L EG+ + ++ YG V + + + LL+ G++ TV +ARF +PLD ALI LA+ ++T+EEG++ GGFG+ VV+ L+ +L T + + +PD+ +DH SP GLTP+ ++ + Sbjct: 496 GRGEVLCEGDDLLIVAYGVMVPAAMITAQLLQEAGVKATVINARFLRPLDQALIHPLARRIGRVVTMEEGALAGGFGAAVVESLSDQDVLVPTFR---IGIPDQLVDHASPQQSREALGLTPTQMSERI 621
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SYNR3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain RCC307) GN=dxs PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 9.305e-18 Identity = 51/134 (38.06%), Postives = 78/134 (58.21%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401 G+G +L EG+ + ++ YG V +A + LL+ G+R TV +ARF +PLD AL+ LAK ++T+EEG + GGFG+ V++ L +L V L +PD+ +DH SP + GLTP +A + G Sbjct: 496 GRGELLAEGDDLLIVAYGAMVAPAMATAGLLQEQGIRATVVNARFLRPLDEALLVPLAKRIGRVVTMEEGCLAGGFGAAVMEALHDRDVL---VPMLRLGIPDQLVDHASPDESKQALGLTPPQMADRICERFG 626
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_NITMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dxs PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 9.305e-18 Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 359 G+G I EG +ALL +G+ +Q CL A+ L + TVA+ RF KPLD L+ SLA +HE+L+TVEE ++ GG GS V++ L+ G TV L LPD ++D G P+ L++ GL Sbjct: 488 GRGEIRREGAEIALLAFGSMLQPCLEAAEELNA-----TVANMRFVKPLDDDLVASLAANHELLVTVEENTVMGGAGSAVLESLSARG---RTVPVLQLGLPDTFLDQGDPSQMLSECGL 599
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_NITEU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosomonas europaea GN=dxs PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 9.305e-18 Identity = 53/129 (41.09%), Postives = 78/129 (60.47%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG I +G+++ALL +G+ + CL A L++ TV + RF KPLD L+ +LA HE+L+T+EE +I GG GS V++ L+ LD V+ L LPD +ID G PA L+ GL + I ++ Sbjct: 488 GKGEIRRQGKQIALLAFGSMLTPCLEAGDELDA-----TVVNMRFVKPLDQELVATLAAEHELLVTIEENTIMGGAGSAVMESLS---SLDKNVRLLQLGLPDSFIDQGDPAHMLSDCGLDKAGIIQSI 608
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ACAM1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=dxs PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 9.305e-18 Identity = 52/135 (38.52%), Postives = 77/135 (57.04%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404 GK L G+ V LL YGT V + +L HG+R TV +ARF KPLD LI LA+ ++T+EEG + GGFGS V++ L ++ + + +PD+ ++H +P A+ GLTP+ +A V +L Q Sbjct: 496 GKAETLRHGDDVLLLAYGTMVNLASQVADMLTEHGVRATVVNARFAKPLDTELIIPLAQKIGQVVTLEEGCLPGGFGSAVLEALMDHQVMAPVTR---IGVPDQLVEHATPDQSKAELGLTPAQVAERVLGLLKQ 627
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_VIBPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio parahaemolyticus GN=dxs PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17 Identity = 52/135 (38.52%), Postives = 81/135 (60.00%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404 GKGR++ +GE+VA+L +GT + + L A+ L TVAD RF KPLD ALIR LA H+VL+T+EE +I GG G+ V++F+ + ++ + L LPD++I G+ + + GL I ++ L + Sbjct: 495 GKGRVVRKGEKVAILSFGTFLPNALEAAK-----NLNATVADMRFVKPLDEALIRQLADEHDVLVTLEENAIAGGAGAGVIEFMMKEKIIKPVLN---LGLPDKFIHQGTQEELHEELGLDAKGIEKSIAEYLAK 621
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEPW (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain W619) GN=dxs PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17 Identity = 56/129 (43.41%), Postives = 77/129 (59.69%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG I +GE+VALL +G + A AL + + TV D RF KPLD AL+ LA SH +L+T+EE +I GG G+ V +FLA ++ + L LPD Y++H PA LA+ GL + I A+V Sbjct: 502 GKGVIRRQGEKVALLVFGVQL-----AEALQVAEQINATVVDMRFVKPLDEALVLELAGSHALLVTLEENAIMGGAGAAVGEFLASQAVIKPLLH---LGLPDIYVEHAKPAQMLAECGLDAAGIEASV 622
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SYNJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxs PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17 Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GK +L G V +L YG+ V L A+ +L+ HG+ TV +ARF KPLD LI LA+ +++TVEEG + GGFGS V + L LD D V L +PD +++H +P + LA+ GL IA + Sbjct: 502 GKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISTTVVNARFAKPLDTELILPLAQQSRLVVTVEEGCLMGGFGSAVGEAL-LDA--DIRVPLLRLGVPDVWVEHATPEESLAELGLNSVGIAERI 627 The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 386
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bpback to top |