CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BORPD (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.455e-18
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +  +G  +A+L +GT  Q+ LAA+  L++     TVAD RF KP+D  LI  LA  H+ ++TVEE +I GG GS V++ L  +G++   V    L LPDR+IDHG  A  LA  GL  + I  ++
Sbjct:  491 GKGIVRRQGRGIAILAFGTLTQAALAAAEALDA-----TVADMRFVKPIDRELILQLAAGHDAIVTVEEAAIMGGAGSAVIEVLHHEGVV---VPVLQLGLPDRFIDHGDQAALLAGLGLDAAGIERSI 611          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. tomato GN=dxs PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.124e-18
Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +  +G+ VA+L +G  +     A AL+ +  L  TV D RF KPLD AL+R  A SHE+L+T+EE ++ GG G+ V +FLA   +L   +    L LPD Y++H  PA  LA+ GL    I A +
Sbjct:  503 GKGVVRRQGQGVAILVFGVQL-----AEALVVAEKLDATVIDMRFVKPLDEALVRETAASHELLVTLEENAVMGGAGAAVSEFLARANILKSVLH---LGLPDVYVEHAKPAQMLAECGLDAEGIEAAI 623          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PROM3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.124e-18
Identity = 47/129 (36.43%), Postives = 80/129 (62.02%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            G+G +L EG+ + ++ YG  V + +  + LL+  G++ TV +ARF +PLD ALI  LA+    ++T+EEG++ GGFG+ VV+ L+   +L  T +   + +PD+ +DH SP       GLTP+ ++  +
Sbjct:  496 GRGEVLCEGDDLLIVAYGVMVPAAMITAQLLQEAGVKATVINARFLRPLDQALIHPLARRIGRVVTMEEGALAGGFGAAVVESLSDQDVLVPTFR---IGIPDQLVDHASPQQSREALGLTPTQMSERI 621          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SYNR3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain RCC307) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.305e-18
Identity = 51/134 (38.06%), Postives = 78/134 (58.21%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401
            G+G +L EG+ + ++ YG  V   +A + LL+  G+R TV +ARF +PLD AL+  LAK    ++T+EEG + GGFG+ V++ L    +L   V    L +PD+ +DH SP +     GLTP  +A  +    G
Sbjct:  496 GRGELLAEGDDLLIVAYGAMVAPAMATAGLLQEQGIRATVVNARFLRPLDEALLVPLAKRIGRVVTMEEGCLAGGFGAAVMEALHDRDVL---VPMLRLGIPDQLVDHASPDESKQALGLTPPQMADRICERFG 626          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_NITMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.305e-18
Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 359
            G+G I  EG  +ALL +G+ +Q CL A+  L +     TVA+ RF KPLD  L+ SLA +HE+L+TVEE ++ GG GS V++ L+  G    TV    L LPD ++D G P+  L++ GL
Sbjct:  488 GRGEIRREGAEIALLAFGSMLQPCLEAAEELNA-----TVANMRFVKPLDDDLVASLAANHELLVTVEENTVMGGAGSAVLESLSARG---RTVPVLQLGLPDTFLDQGDPSQMLSECGL 599          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_NITEU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosomonas europaea GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.305e-18
Identity = 53/129 (41.09%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG I  +G+++ALL +G+ +  CL A   L++     TV + RF KPLD  L+ +LA  HE+L+T+EE +I GG GS V++ L+    LD  V+   L LPD +ID G PA  L+  GL  + I  ++
Sbjct:  488 GKGEIRRQGKQIALLAFGSMLTPCLEAGDELDA-----TVVNMRFVKPLDQELVATLAAEHELLVTIEENTIMGGAGSAVMESLS---SLDKNVRLLQLGLPDSFIDQGDPAHMLSDCGLDKAGIIQSI 608          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ACAM1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.305e-18
Identity = 52/135 (38.52%), Postives = 77/135 (57.04%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GK   L  G+ V LL YGT V      + +L  HG+R TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V++ L    ++    +   + +PD+ ++H +P    A+ GLTP+ +A  V  +L Q
Sbjct:  496 GKAETLRHGDDVLLLAYGTMVNLASQVADMLTEHGVRATVVNARFAKPLDTELIIPLAQKIGQVVTLEEGCLPGGFGSAVLEALMDHQVMAPVTR---IGVPDQLVEHATPDQSKAELGLTPAQVAERVLGLLKQ 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_VIBPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio parahaemolyticus GN=dxs PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17
Identity = 52/135 (38.52%), Postives = 81/135 (60.00%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR++ +GE+VA+L +GT + + L A+       L  TVAD RF KPLD ALIR LA  H+VL+T+EE +I GG G+ V++F+  + ++   +    L LPD++I  G+  +   + GL    I  ++   L +
Sbjct:  495 GKGRVVRKGEKVAILSFGTFLPNALEAAK-----NLNATVADMRFVKPLDEALIRQLADEHDVLVTLEENAIAGGAGAGVIEFMMKEKIIKPVLN---LGLPDKFIHQGTQEELHEELGLDAKGIEKSIAEYLAK 621          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEPW (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain W619) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17
Identity = 56/129 (43.41%), Postives = 77/129 (59.69%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG I  +GE+VALL +G  +     A AL  +  +  TV D RF KPLD AL+  LA SH +L+T+EE +I GG G+ V +FLA   ++   +    L LPD Y++H  PA  LA+ GL  + I A+V
Sbjct:  502 GKGVIRRQGEKVALLVFGVQL-----AEALQVAEQINATVVDMRFVKPLDEALVLELAGSHALLVTLEENAIMGGAGAAVGEFLASQAVIKPLLH---LGLPDIYVEHAKPAQMLAECGLDAAGIEASV 622          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SYNJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17
Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GK  +L  G  V +L YG+ V   L A+ +L+ HG+  TV +ARF KPLD  LI  LA+   +++TVEEG + GGFGS V + L LD   D  V    L +PD +++H +P + LA+ GL    IA  +
Sbjct:  502 GKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISTTVVNARFAKPLDTELILPLAQQSRLVVTVEEGCLMGGFGSAVGEAL-LDA--DIRVPLLRLGVPDVWVEHATPEESLAELGLNSVGIAERI 627          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_BORPD5.455e-1842.641-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_PSESM7.124e-1841.861-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PROM37.124e-1836.431-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_SYNR39.305e-1838.061-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_NITMU9.305e-1844.171-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_NITEU9.305e-1841.091-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_ACAM19.305e-1838.521-deoxy-D-xylulose-5-phosphate synthase OS=Acaryoc... [more]
DXS_VIBPA1.215e-1738.521-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_PSEPW1.215e-1743.411-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_SYNJA1.587e-1741.861-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
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