CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RALME (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17
Identity = 59/149 (39.60%), Postives = 88/149 (59.06%), Query Frame = 3
Query:    3 GKGRILIEG-----ERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG-SIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMS 431
            GKG I  EG     +RVA++ +G+ V   L A+  L++     TVA+ RF KPLD  L++ LA +H+ L+TVEEG ++GG GS V++ LA  G+   T+    L LPD++IDHG PA  L+  GL  + I  +V      T + +++ S
Sbjct:  495 GKGEIRREGHARAGQRVAIMAFGSMVHPALTAAEQLDA-----TVANMRFVKPLDVELVKQLAANHDFLVTVEEGATMGGAGSAVLEALAEAGIELPTL---VLGLPDKFIDHGDPAHLLSLCGLDAAGIERSVRERFSLTAQPVKVAS 635          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEE4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas entomophila (strain L48) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17
Identity = 52/129 (40.31%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +  +G +VALL +G  +   L  +  +++     TV D RF KPLD AL+  +A  HE+L+T+EE +I GG G+ V +FLA +G++   +    L LPD Y++H  PA  LA+ GL  + I A+V
Sbjct:  502 GKGVVRRQGGKVALLVFGVQLTEALQVAEQIDA-----TVVDMRFVKPLDEALVLEMAAGHELLVTIEENAIMGGAGAAVGEFLAREGVVKPLLH---LGLPDIYVEHAKPAQMLAECGLDAAGIEASV 622          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PELLD (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelodictyon luteolum (strain DSM 273) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17
Identity = 58/132 (43.94%), Postives = 76/132 (57.58%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLV---LPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            G+GRI+ EG    L   G+ VQ+ + A+ALLE+ G++  + D RF KPLD ALI  LA S   ++T+EE SI GG GS V   LA       + K  PL+   LPDR+I HGS  D   + GL  + IA  V
Sbjct:  498 GRGRIIREGTGPVLFAIGSMVQAAVEAAALLEAEGIKPDIVDMRFLKPLDTALIDRLAASATHIVTIEENSILGGLGSAVSDHLA------SSPKKTPLLKIGLPDRFITHGSMQDLYRETGLDAAGIAEHV 623          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_NITEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosomonas eutropha (strain C91) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17
Identity = 53/129 (41.09%), Postives = 76/129 (58.91%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG I  +G R+ALL +G+ +  CL A   L++     TV + RF KPLD  L+ +LA  HE+L+TVEE +I GG GS V++ LA  G+    ++   L L D ++D G PA  L+  GL  + I  +V
Sbjct:  488 GKGEIRRQGTRIALLAFGSMLSPCLEAGDELDA-----TVVNMRFVKPLDQELVMTLAAEHELLVTVEENTIMGGAGSAVLECLASQGV---NIRLLQLGLSDNFLDQGDPAQMLSDCGLDKTGIIKSV 608          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_LEPCP (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 3
Query:   21 IEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            + G R+A+L +GT +   LAA+  L++     TVA+ RF KPLD AL+  LA++H+ L+TVEEG + GG GS V++ L   GL    +    L LPD++I+HG PA  LA  GL  + I A +
Sbjct:  507 VRGPRIAILAFGTLLYPALAAAEKLDA-----TVANMRFIKPLDAALVEQLARTHDALVTVEEGCLMGGAGSAVLEALQAAGLQTPVL---TLGLPDQFIEHGDPALLLAACGLDSAGIEAAI 621          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURP6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 668) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17
Identity = 50/122 (40.98%), Postives = 79/122 (64.75%), Query Frame = 3
Query:   24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            +G+R+A+L +GT V   LAA+  L++     TVA+ RF KP+D  L+++LA++H+ L+TVEEG + GG GS  V+ +   G++   ++   L LPDR++DHG PA  L+  GL    IA ++
Sbjct:  502 DGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGVVRPVLQ---LGLPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_THISH (1-deoxy-D-xylulose-5-phosphate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.073e-17
Identity = 53/129 (41.09%), Postives = 80/129 (62.02%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GK ++  +G  VALL +G  + + LAA+  L++     TV + RF KPLD AL+R +A+ H++L+T+E+  + GG GS V + LA+ G+   TV    L LPDR+ +HGS  + L++AGL    I A V
Sbjct:  494 GKAQLRRKGRGVALLAFGAVLPAALAAAEPLDA-----TVVNMRFVKPLDEALVREMAEGHDLLVTLEDNVVAGGAGSAVAESLAVQGI---TVPLLHLGLPDRFQEHGSREELLSEAGLDAEGILAAV 614          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SHEHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.707e-17
Identity = 53/129 (41.09%), Postives = 82/129 (63.57%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKW-RPLV---LPDRYIDHGSPADQLAQAGLTPSHI 374
            GKG +  +G+++A+L +GT + SCL A+  L++     TVAD RF KPLD  L++ LA +H+VL+TVEE +I GG GS V++ L        T+K  +P++   LPD +I HG+P +  ++ GL  + I
Sbjct:  496 GKGLLKRQGQKIAILNFGTTLASCLVAAEALDA-----TVADMRFVKPLDVELVKELAANHDVLVTVEENAIMGGAGSGVLELLQ-------TLKMPKPVLLIGLPDEFIKHGAPEEITSELGLDAAGI 612          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei GN=dxs PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.707e-17
Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = 3
Query:   24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            +G+R+A+L +GT V   LAA+  L++     TVA+ RF KP+D  L+++LA++H+ L+TVEEG + GG GS  V+ +   G +   ++   L LPDR++DHG PA  L+  GL    IA ++
Sbjct:  502 DGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGAVRPVLQ---LGLPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1710b) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.707e-17
Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = 3
Query:   24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            +G+R+A+L +GT V   LAA+  L++     TVA+ RF KP+D  L+++LA++H+ L+TVEEG + GG GS  V+ +   G +   ++   L LPDR++DHG PA  L+  GL    IA ++
Sbjct:  502 DGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGAVRPVLQ---LGLPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_RALME1.587e-1739.601-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_PSEE41.587e-1740.311-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PELLD1.587e-1743.941-deoxy-D-xylulose-5-phosphate synthase OS=Pelodic... [more]
DXS_NITEC1.587e-1741.091-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_LEPCP1.587e-1743.091-deoxy-D-xylulose-5-phosphate synthase OS=Leptoth... [more]
DXS_BURP61.587e-1740.981-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_THISH2.073e-1741.091-deoxy-D-xylulose-5-phosphate synthase OS=Thioalk... [more]
DXS_SHEHH2.707e-1741.091-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_BURPS2.707e-1740.981-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURP12.707e-1740.981-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
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