CF417125
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RALME (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dxs PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17 Identity = 59/149 (39.60%), Postives = 88/149 (59.06%), Query Frame = 3 Query: 3 GKGRILIEG-----ERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG-SIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMS 431 GKG I EG +RVA++ +G+ V L A+ L++ TVA+ RF KPLD L++ LA +H+ L+TVEEG ++GG GS V++ LA G+ T+ L LPD++IDHG PA L+ GL + I +V T + +++ S Sbjct: 495 GKGEIRREGHARAGQRVAIMAFGSMVHPALTAAEQLDA-----TVANMRFVKPLDVELVKQLAANHDFLVTVEEGATMGGAGSAVLEALAEAGIELPTL---VLGLPDKFIDHGDPAHLLSLCGLDAAGIERSVRERFSLTAQPVKVAS 635
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEE4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas entomophila (strain L48) GN=dxs PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17 Identity = 52/129 (40.31%), Postives = 78/129 (60.47%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + +G +VALL +G + L + +++ TV D RF KPLD AL+ +A HE+L+T+EE +I GG G+ V +FLA +G++ + L LPD Y++H PA LA+ GL + I A+V Sbjct: 502 GKGVVRRQGGKVALLVFGVQLTEALQVAEQIDA-----TVVDMRFVKPLDEALVLEMAAGHELLVTIEENAIMGGAGAAVGEFLAREGVVKPLLH---LGLPDIYVEHAKPAQMLAECGLDAAGIEASV 622
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PELLD (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelodictyon luteolum (strain DSM 273) GN=dxs PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17 Identity = 58/132 (43.94%), Postives = 76/132 (57.58%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLV---LPDRYIDHGSPADQLAQAGLTPSHIAATV 386 G+GRI+ EG L G+ VQ+ + A+ALLE+ G++ + D RF KPLD ALI LA S ++T+EE SI GG GS V LA + K PL+ LPDR+I HGS D + GL + IA V Sbjct: 498 GRGRIIREGTGPVLFAIGSMVQAAVEAAALLEAEGIKPDIVDMRFLKPLDTALIDRLAASATHIVTIEENSILGGLGSAVSDHLA------SSPKKTPLLKIGLPDRFITHGSMQDLYRETGLDAAGIAEHV 623
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_NITEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosomonas eutropha (strain C91) GN=dxs PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17 Identity = 53/129 (41.09%), Postives = 76/129 (58.91%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG I +G R+ALL +G+ + CL A L++ TV + RF KPLD L+ +LA HE+L+TVEE +I GG GS V++ LA G+ ++ L L D ++D G PA L+ GL + I +V Sbjct: 488 GKGEIRRQGTRIALLAFGSMLSPCLEAGDELDA-----TVVNMRFVKPLDQELVMTLAAEHELLVTVEENTIMGGAGSAVLECLASQGV---NIRLLQLGLSDNFLDQGDPAQMLSDCGLDKTGIIKSV 608
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_LEPCP (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=dxs PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17 Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 3 Query: 21 IEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 + G R+A+L +GT + LAA+ L++ TVA+ RF KPLD AL+ LA++H+ L+TVEEG + GG GS V++ L GL + L LPD++I+HG PA LA GL + I A + Sbjct: 507 VRGPRIAILAFGTLLYPALAAAEKLDA-----TVANMRFIKPLDAALVEQLARTHDALVTVEEGCLMGGAGSAVLEALQAAGLQTPVL---TLGLPDQFIEHGDPALLLAACGLDSAGIEAAI 621
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURP6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 668) GN=dxs PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17 Identity = 50/122 (40.98%), Postives = 79/122 (64.75%), Query Frame = 3 Query: 24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 +G+R+A+L +GT V LAA+ L++ TVA+ RF KP+D L+++LA++H+ L+TVEEG + GG GS V+ + G++ ++ L LPDR++DHG PA L+ GL IA ++ Sbjct: 502 DGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGVVRPVLQ---LGLPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_THISH (1-deoxy-D-xylulose-5-phosphate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=dxs PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.073e-17 Identity = 53/129 (41.09%), Postives = 80/129 (62.02%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GK ++ +G VALL +G + + LAA+ L++ TV + RF KPLD AL+R +A+ H++L+T+E+ + GG GS V + LA+ G+ TV L LPDR+ +HGS + L++AGL I A V Sbjct: 494 GKAQLRRKGRGVALLAFGAVLPAALAAAEPLDA-----TVVNMRFVKPLDEALVREMAEGHDLLVTLEDNVVAGGAGSAVAESLAVQGI---TVPLLHLGLPDRFQEHGSREELLSEAGLDAEGILAAV 614
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SHEHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=dxs PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.707e-17 Identity = 53/129 (41.09%), Postives = 82/129 (63.57%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKW-RPLV---LPDRYIDHGSPADQLAQAGLTPSHI 374 GKG + +G+++A+L +GT + SCL A+ L++ TVAD RF KPLD L++ LA +H+VL+TVEE +I GG GS V++ L T+K +P++ LPD +I HG+P + ++ GL + I Sbjct: 496 GKGLLKRQGQKIAILNFGTTLASCLVAAEALDA-----TVADMRFVKPLDVELVKELAANHDVLVTVEENAIMGGAGSGVLELLQ-------TLKMPKPVLLIGLPDEFIKHGAPEEITSELGLDAAGI 612
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei GN=dxs PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.707e-17 Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = 3 Query: 24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 +G+R+A+L +GT V LAA+ L++ TVA+ RF KP+D L+++LA++H+ L+TVEEG + GG GS V+ + G + ++ L LPDR++DHG PA L+ GL IA ++ Sbjct: 502 DGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGAVRPVLQ---LGLPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1710b) GN=dxs PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.707e-17 Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = 3 Query: 24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 +G+R+A+L +GT V LAA+ L++ TVA+ RF KP+D L+++LA++H+ L+TVEEG + GG GS V+ + G + ++ L LPDR++DHG PA L+ GL IA ++ Sbjct: 502 DGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGAVRPVLQ---LGLPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615 The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 386
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bpback to top |