CF417125
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURP0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=dxs PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.707e-17 Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = 3 Query: 24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 +G+R+A+L +GT V LAA+ L++ TVA+ RF KP+D L+++LA++H+ L+TVEEG + GG GS V+ + G + ++ L LPDR++DHG PA L+ GL IA ++ Sbjct: 502 DGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGAVRPVLQ---LGLPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia mallei GN=dxs PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.707e-17 Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = 3 Query: 24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 +G+R+A+L +GT V LAA+ L++ TVA+ RF KP+D L+++LA++H+ L+TVEEG + GG GS V+ + G + ++ L LPDR++DHG PA L+ GL IA ++ Sbjct: 502 DGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGAVRPVLQ---LGLPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CYAP4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxs PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.536e-17 Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GK +L +G+ + +L YG+ V L A+ +L HG+ TV +ARF KPLD LI LA+ ++TVEEG IGGFGS V++ L +L V + +PD ++H +P AQ GLT + IA V Sbjct: 495 GKAEVLRQGDDLLMLAYGSMVYPTLQAAEILREHGIAATVVNARFAKPLDTELILPLAEKLGRVVTVEEGCLIGGFGSAVLEALQDQEIL---VPVTRIGIPDILVEHATPDQSKAQLGLTSAQIAERV 620
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSE14 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dxs PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.618e-17 Identity = 52/129 (40.31%), Postives = 75/129 (58.14%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + +G+ VA+L +G + A AL+ + L TV D RF KPLD AL+ A +HE+L+T+EE ++ GG G+ V +FLA +L + L LPD Y++H PA LA+ GL I A + Sbjct: 502 GKGVVRRQGQGVAILVFGVQL-----ADALVVAEKLDATVIDMRFVKPLDEALVSEAAANHELLVTLEENAVMGGAGAAVSEFLARANILKSVLH---LGLPDTYVEHAKPAQMLAECGLDAQGIEAAI 622
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PROMP (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxs PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.618e-17 Identity = 48/131 (36.64%), Postives = 77/131 (58.78%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFN 392 G+G IL EG+ V ++ YG+ VQS + LL++ G+ + +ARF +PLD LI L + + ++T+EEG+ +GGFGS +V+ L + D + + +PD +DH SP + GLTP +A + N Sbjct: 496 GEGEILEEGDDVLIIAYGSMVQSATETANLLKNRGISACIINARFVRPLDQDLIIPLVRKLKKVVTMEEGTLVGGFGSAIVEMLNDN---DINIPVLRIGIPDVLVDHASPDQSKEKLGLTPDQMAEKIIN 623
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CHRVO (1-deoxy-D-xylulose-5-phosphate synthase OS=Chromobacterium violaceum GN=dxs PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.618e-17 Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + G++VA+L +G+ V LAA+ L++ TVAD RF KPLD LIR LA++HE+++TVEE + GG GS + L GL T+ L LPD Y++HG PA L+ GL + I ++ Sbjct: 490 GKGVVRRRGKQVAILAFGSMVHPALAAAEALDA-----TVADMRFVKPLDAELIRKLAQTHELIVTVEENVVMGGAGSGCGEALQAMGLAVPTLH---LGLPDDYVEHGDPALLLSLCGLDAAGIEKSI 610
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_VIBCM (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=dxs PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.031e-17 Identity = 55/140 (39.29%), Postives = 85/140 (60.71%), Query Frame = 3 Query: 3 GKGRIL-----IEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404 GKGR++ EGE+VA+L +GT + + L A+ L + TVAD RF KPLD ALI+ LA++H+VL+T+EE +I GG G+ V++FL + L + L LPD++I G+ + A+ GL + I + + L + Sbjct: 495 GKGRLMRESTACEGEKVAILSFGTLLPNALQAAEKLNA-----TVADMRFVKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFLMKEKQLKPVLN---LGLPDQFIVQGTQEEMHAELGLDGAGIERAIRDYLAK 626
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_VIBCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio cholerae GN=dxs PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.031e-17 Identity = 55/140 (39.29%), Postives = 85/140 (60.71%), Query Frame = 3 Query: 3 GKGRIL-----IEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404 GKGR++ EGE+VA+L +GT + + L A+ L + TVAD RF KPLD ALI+ LA++H+VL+T+EE +I GG G+ V++FL + L + L LPD++I G+ + A+ GL + I + + L + Sbjct: 495 GKGRLMRESTACEGEKVAILSFGTLLPNALQAAEKLNA-----TVADMRFVKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFLMKEKQLKPVLN---LGLPDQFIVQGTQEEMHAELGLDGAGIERAIRDYLAK 626
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_VIBC3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=dxs PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.031e-17 Identity = 55/140 (39.29%), Postives = 85/140 (60.71%), Query Frame = 3 Query: 3 GKGRIL-----IEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404 GKGR++ EGE+VA+L +GT + + L A+ L + TVAD RF KPLD ALI+ LA++H+VL+T+EE +I GG G+ V++FL + L + L LPD++I G+ + A+ GL + I + + L + Sbjct: 495 GKGRLMRESTACEGEKVAILSFGTLLPNALQAAEKLNA-----TVADMRFVKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFLMKEKQLKPVLN---LGLPDQFIVQGTQEEMHAELGLDGAGIERAIRDYLAK 626
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_GLOVI (1-deoxy-D-xylulose-5-phosphate synthase OS=Gloeobacter violaceus GN=dxs PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.877e-17 Identity = 51/129 (39.53%), Postives = 76/129 (58.91%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG-SIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GK +L G+ + ++ GT V L A+ALL HG+ TV +ARF KPLD L+ LA+ ++TVEEG +GGFGS V++ L G+ T++ + + D+++ H + L GLTPS IA T+ Sbjct: 499 GKAEVLRSGDDLLIVAIGTMVHPSLQAAALLSEHGIDATVVNARFAKPLDTELLLPLARRIGRVVTVEEGCRMGGFGSAVLEALMDGGIAVPTLR---IGIDDKFVTHAGRSQLLDLLGLTPSGIAKTI 624 The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 386
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bpback to top |