CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURP0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.707e-17
Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = 3
Query:   24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            +G+R+A+L +GT V   LAA+  L++     TVA+ RF KP+D  L+++LA++H+ L+TVEEG + GG GS  V+ +   G +   ++   L LPDR++DHG PA  L+  GL    IA ++
Sbjct:  502 DGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGAVRPVLQ---LGLPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia mallei GN=dxs PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.707e-17
Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = 3
Query:   24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            +G+R+A+L +GT V   LAA+  L++     TVA+ RF KP+D  L+++LA++H+ L+TVEEG + GG GS  V+ +   G +   ++   L LPDR++DHG PA  L+  GL    IA ++
Sbjct:  502 DGKRIAILAFGTMVAPSLAAADALDA-----TVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGSACVEAMMESGAVRPVLQ---LGLPDRFVDHGDPAKLLSLCGLDGDGIAKSI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CYAP4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.536e-17
Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GK  +L +G+ + +L YG+ V   L A+ +L  HG+  TV +ARF KPLD  LI  LA+    ++TVEEG  IGGFGS V++ L    +L   V    + +PD  ++H +P    AQ GLT + IA  V
Sbjct:  495 GKAEVLRQGDDLLMLAYGSMVYPTLQAAEILREHGIAATVVNARFAKPLDTELILPLAEKLGRVVTVEEGCLIGGFGSAVLEALQDQEIL---VPVTRIGIPDILVEHATPDQSKAQLGLTSAQIAERV 620          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSE14 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.618e-17
Identity = 52/129 (40.31%), Postives = 75/129 (58.14%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +  +G+ VA+L +G  +     A AL+ +  L  TV D RF KPLD AL+   A +HE+L+T+EE ++ GG G+ V +FLA   +L   +    L LPD Y++H  PA  LA+ GL    I A +
Sbjct:  502 GKGVVRRQGQGVAILVFGVQL-----ADALVVAEKLDATVIDMRFVKPLDEALVSEAAANHELLVTLEENAVMGGAGAAVSEFLARANILKSVLH---LGLPDTYVEHAKPAQMLAECGLDAQGIEAAI 622          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PROMP (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.618e-17
Identity = 48/131 (36.64%), Postives = 77/131 (58.78%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFN 392
            G+G IL EG+ V ++ YG+ VQS    + LL++ G+   + +ARF +PLD  LI  L +  + ++T+EEG+ +GGFGS +V+ L  +   D  +    + +PD  +DH SP     + GLTP  +A  + N
Sbjct:  496 GEGEILEEGDDVLIIAYGSMVQSATETANLLKNRGISACIINARFVRPLDQDLIIPLVRKLKKVVTMEEGTLVGGFGSAIVEMLNDN---DINIPVLRIGIPDVLVDHASPDQSKEKLGLTPDQMAEKIIN 623          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CHRVO (1-deoxy-D-xylulose-5-phosphate synthase OS=Chromobacterium violaceum GN=dxs PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.618e-17
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +   G++VA+L +G+ V   LAA+  L++     TVAD RF KPLD  LIR LA++HE+++TVEE  + GG GS   + L   GL   T+    L LPD Y++HG PA  L+  GL  + I  ++
Sbjct:  490 GKGVVRRRGKQVAILAFGSMVHPALAAAEALDA-----TVADMRFVKPLDAELIRKLAQTHELIVTVEENVVMGGAGSGCGEALQAMGLAVPTLH---LGLPDDYVEHGDPALLLSLCGLDAAGIEKSI 610          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_VIBCM (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.031e-17
Identity = 55/140 (39.29%), Postives = 85/140 (60.71%), Query Frame = 3
Query:    3 GKGRIL-----IEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR++      EGE+VA+L +GT + + L A+  L +     TVAD RF KPLD ALI+ LA++H+VL+T+EE +I GG G+ V++FL  +  L   +    L LPD++I  G+  +  A+ GL  + I   + + L +
Sbjct:  495 GKGRLMRESTACEGEKVAILSFGTLLPNALQAAEKLNA-----TVADMRFVKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFLMKEKQLKPVLN---LGLPDQFIVQGTQEEMHAELGLDGAGIERAIRDYLAK 626          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_VIBCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio cholerae GN=dxs PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.031e-17
Identity = 55/140 (39.29%), Postives = 85/140 (60.71%), Query Frame = 3
Query:    3 GKGRIL-----IEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR++      EGE+VA+L +GT + + L A+  L +     TVAD RF KPLD ALI+ LA++H+VL+T+EE +I GG G+ V++FL  +  L   +    L LPD++I  G+  +  A+ GL  + I   + + L +
Sbjct:  495 GKGRLMRESTACEGEKVAILSFGTLLPNALQAAEKLNA-----TVADMRFVKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFLMKEKQLKPVLN---LGLPDQFIVQGTQEEMHAELGLDGAGIERAIRDYLAK 626          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_VIBC3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.031e-17
Identity = 55/140 (39.29%), Postives = 85/140 (60.71%), Query Frame = 3
Query:    3 GKGRIL-----IEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR++      EGE+VA+L +GT + + L A+  L +     TVAD RF KPLD ALI+ LA++H+VL+T+EE +I GG G+ V++FL  +  L   +    L LPD++I  G+  +  A+ GL  + I   + + L +
Sbjct:  495 GKGRLMRESTACEGEKVAILSFGTLLPNALQAAEKLNA-----TVADMRFVKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFLMKEKQLKPVLN---LGLPDQFIVQGTQEEMHAELGLDGAGIERAIRDYLAK 626          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_GLOVI (1-deoxy-D-xylulose-5-phosphate synthase OS=Gloeobacter violaceus GN=dxs PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.877e-17
Identity = 51/129 (39.53%), Postives = 76/129 (58.91%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG-SIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GK  +L  G+ + ++  GT V   L A+ALL  HG+  TV +ARF KPLD  L+  LA+    ++TVEEG  +GGFGS V++ L   G+   T++   + + D+++ H   +  L   GLTPS IA T+
Sbjct:  499 GKAEVLRSGDDLLIVAIGTMVHPSLQAAALLSEHGIDATVVNARFAKPLDTELLLPLARRIGRVVTVEEGCRMGGFGSAVLEALMDGGIAVPTLR---IGIDDKFVTHAGRSQLLDLLGLTPSGIAKTI 624          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_BURP02.707e-1740.981-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURMA2.707e-1740.981-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_CYAP43.536e-1741.091-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_PSE144.618e-1740.311-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PROMP4.618e-1736.641-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_CHRVO4.618e-1742.641-deoxy-D-xylulose-5-phosphate synthase OS=Chromob... [more]
DXS_VIBCM6.031e-1739.291-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_VIBCH6.031e-1739.291-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_VIBC36.031e-1739.291-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_GLOVI7.877e-1739.531-deoxy-D-xylulose-5-phosphate synthase OS=Gloeoba... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
back to top