CF417125
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BRASB (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=dxs PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 3.760e-35 Identity = 72/134 (53.73%), Postives = 96/134 (71.64%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404 GKGR++ +G++VALL +GT + C A+ L +HGL ++ADARF KPLD L+ LA+ HE+LIT+EEGSIGGFGSHV+Q+LA G+LDG +K R +VLPD + DH +PA A+AGL I VF LG+ Sbjct: 498 GKGRMIRQGKQVALLSFGTRLAECEKAADELAAHGLSASIADARFMKPLDEELVLKLAREHEILITIEEGSIGGFGSHVMQYLADQGMLDGGLKMRSMVLPDEFQDHDTPAAMYARAGLDAKGIVRKVFEALGK 631
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHOCS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 8.377e-35 Identity = 77/133 (57.89%), Postives = 93/133 (69.92%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401 GKGRI+ EG +VA+L GT ++ L A+ L + GL TVADARF KP+D ALIR LA+ HEVLITVEEGSIGGFGS+V+ FLA GLLD +K RP+VLPD + D +PA Q +AGL HI T LG Sbjct: 498 GKGRIVKEGTKVAILSLGTRLKEALLAAEDLNARGLSTTVADARFAKPIDEALIRRLAQDHEVLITVEEGSIGGFGSYVLHFLAQSGLLDQGLKVRPMVLPDIFQDQDAPAKQYDEAGLNARHIVETALKALG 630
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHOP5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=dxs PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.429e-34 Identity = 75/136 (55.15%), Postives = 95/136 (69.85%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTR 410 GKGR++ +G ++ALL +GT + C A+ L + GL TVADARF KPLD L+ LA+ HEVLITVEEGSIGGFGSHV+Q LA G+LDG V+ R LVLPD ++DH +PA A+AGL I VF LG+ + Sbjct: 498 GKGRVVRQGNKIALLSFGTRLAECEKAADELATLGLSTTVADARFMKPLDVELVLKLAREHEVLITVEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTPAVMYARAGLDAKGIVKKVFEALGKDK 633
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHIEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxs PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.429e-34 Identity = 75/132 (56.82%), Postives = 95/132 (71.97%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398 GKGRI+ EG +VALL +GT + CL AS LE+ GL TVADARF KPLDH L+R LA+ HE+LITVEEGS+GGFGS V+Q+L+ +GLLD +K R LV+PD +++ P A AGL + I +TVF L Sbjct: 497 GKGRIVKEGTKVALLSFGTRLADCLLASEDLEAAGLSTTVADARFAKPLDHELLRQLARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRAL 628
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_AGRRK (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxs PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.429e-34 Identity = 76/135 (56.30%), Postives = 96/135 (71.11%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 407 GKGRI+ +G +VALL +GT + LAA+ L++ GL TVADARF KPLDH LIR LA HEVLIT+EEGS+GGFGS V+QFLA +GLLD +K R LV+PD +++ P A AGL + I TVF LG++ Sbjct: 497 GKGRIVKQGSKVALLSFGTRLADSLAAAEDLDAAGLPTTVADARFAKPLDHDLIRQLASHHEVLITIEEGSVGGFGSQVMQFLASEGLLDNGLKIRTLVMPDIWVEQAKPEVMNAMAGLDRAGIVQTVFKALGRS 631
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BRAJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium japonicum GN=dxs PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 4.157e-34 Identity = 73/135 (54.07%), Postives = 94/135 (69.63%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLD-GTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404 GKGR++ +G ++ALL +GT + C A+ L +HGL T+ADARF KPLD L+ LA+ HE+LIT+EEGS+GGFGSHV QFL G LD G VK+R +VLPD + DH +PA A+AGL I A VF LG+ Sbjct: 517 GKGRMIRQGSKIALLSFGTRLAECEKAADELAAHGLSTTIADARFMKPLDTELVLKLARDHEILITIEEGSVGGFGSHVAQFLTDQGALDSGMVKFRTMVLPDVFQDHDTPAAMYARAGLDAKGIVAKVFEALGK 651
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 4.157e-34 Identity = 78/139 (56.12%), Postives = 97/139 (69.78%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGT-VKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 416 G+GRI+ EG VALL GT + A+ L S+G+ +TVADARF KPLD L+R LAK+HEVLIT+EEGS+GGFGS V+Q LA +GLLDGT +K+R +VLPD ++DH P AQAGL I A V LG+ EA Sbjct: 498 GRGRIVREGTTVALLSLGTRLAEASKAAEQLASYGISVTVADARFAKPLDLDLVRRLAKNHEVLITIEEGSVGGFGSFVMQALAEEGLLDGTGLKFRSMVLPDTFLDHDKPEKLYAQAGLDAKGIVAKVLATLGRENEA 636
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHOPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxs PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 5.430e-34 Identity = 72/134 (53.73%), Postives = 93/134 (69.40%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404 GKGRI+ EG ++ALL +GT + C A+ L + GL T+ADARF KPLD L+ LA+ HE+L+T+EEGSIGGFGSHV+Q LA G+LDG V+ R LVLPD ++DH +P A+AGL I VF LG+ Sbjct: 498 GKGRIVREGNKIALLSFGTRLAECEKAADELATLGLSTTIADARFMKPLDVELVLKLARDHEILLTIEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTPTAMYARAGLDAKGIVKKVFEALGK 631
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHILW (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dxs PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 5.430e-34 Identity = 73/134 (54.48%), Postives = 96/134 (71.64%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404 GKGRI+ EG +VALL +GT + CL A+ L++ GL TVADARF KPLDH LIR A+ HE++ITVEEGS+GGFGS V+Q+L+ +GLLD +K R LV+PD +++ P A AGL + I +TVF LG+ Sbjct: 497 GKGRIVKEGTKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQFARHHEMVITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALGR 630
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BARHE (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella henselae GN=dxs PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.092e-34 Identity = 73/134 (54.48%), Postives = 96/134 (71.64%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404 GKGRIL EG R+AL+ +GT + L A+ L + GL TVADARF KPLD L+R LA+ HEVL+T+EEG+IGGFG+H++QFLA +GLL+ +K R L LPD Y++HGS L++ GL I TVF+ LG+ Sbjct: 497 GKGRILHEGNRIALVCFGTRISEVLVAADELSAEGLSTTVADARFAKPLDKDLMRRLAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLEHGLKVRTLKLPDEYLNHGSQEKVLSRIGLDAVGIVNTVFSALGR 630 The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 386
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bpback to top |