CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BRASB (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=dxs PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.760e-35
Identity = 72/134 (53.73%), Postives = 96/134 (71.64%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR++ +G++VALL +GT +  C  A+  L +HGL  ++ADARF KPLD  L+  LA+ HE+LIT+EEGSIGGFGSHV+Q+LA  G+LDG +K R +VLPD + DH +PA   A+AGL    I   VF  LG+
Sbjct:  498 GKGRMIRQGKQVALLSFGTRLAECEKAADELAAHGLSASIADARFMKPLDEELVLKLAREHEILITIEEGSIGGFGSHVMQYLADQGMLDGGLKMRSMVLPDEFQDHDTPAAMYARAGLDAKGIVRKVFEALGK 631          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHOCS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.377e-35
Identity = 77/133 (57.89%), Postives = 93/133 (69.92%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401
            GKGRI+ EG +VA+L  GT ++  L A+  L + GL  TVADARF KP+D ALIR LA+ HEVLITVEEGSIGGFGS+V+ FLA  GLLD  +K RP+VLPD + D  +PA Q  +AGL   HI  T    LG
Sbjct:  498 GKGRIVKEGTKVAILSLGTRLKEALLAAEDLNARGLSTTVADARFAKPIDEALIRRLAQDHEVLITVEEGSIGGFGSYVLHFLAQSGLLDQGLKVRPMVLPDIFQDQDAPAKQYDEAGLNARHIVETALKALG 630          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHOP5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=dxs PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.429e-34
Identity = 75/136 (55.15%), Postives = 95/136 (69.85%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTR 410
            GKGR++ +G ++ALL +GT +  C  A+  L + GL  TVADARF KPLD  L+  LA+ HEVLITVEEGSIGGFGSHV+Q LA  G+LDG V+ R LVLPD ++DH +PA   A+AGL    I   VF  LG+ +
Sbjct:  498 GKGRVVRQGNKIALLSFGTRLAECEKAADELATLGLSTTVADARFMKPLDVELVLKLAREHEVLITVEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTPAVMYARAGLDAKGIVKKVFEALGKDK 633          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHIEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxs PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.429e-34
Identity = 75/132 (56.82%), Postives = 95/132 (71.97%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398
            GKGRI+ EG +VALL +GT +  CL AS  LE+ GL  TVADARF KPLDH L+R LA+ HE+LITVEEGS+GGFGS V+Q+L+ +GLLD  +K R LV+PD +++   P    A AGL  + I +TVF  L
Sbjct:  497 GKGRIVKEGTKVALLSFGTRLADCLLASEDLEAAGLSTTVADARFAKPLDHELLRQLARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRAL 628          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_AGRRK (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxs PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.429e-34
Identity = 76/135 (56.30%), Postives = 96/135 (71.11%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 407
            GKGRI+ +G +VALL +GT +   LAA+  L++ GL  TVADARF KPLDH LIR LA  HEVLIT+EEGS+GGFGS V+QFLA +GLLD  +K R LV+PD +++   P    A AGL  + I  TVF  LG++
Sbjct:  497 GKGRIVKQGSKVALLSFGTRLADSLAAAEDLDAAGLPTTVADARFAKPLDHDLIRQLASHHEVLITIEEGSVGGFGSQVMQFLASEGLLDNGLKIRTLVMPDIWVEQAKPEVMNAMAGLDRAGIVQTVFKALGRS 631          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BRAJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium japonicum GN=dxs PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.157e-34
Identity = 73/135 (54.07%), Postives = 94/135 (69.63%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLD-GTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR++ +G ++ALL +GT +  C  A+  L +HGL  T+ADARF KPLD  L+  LA+ HE+LIT+EEGS+GGFGSHV QFL   G LD G VK+R +VLPD + DH +PA   A+AGL    I A VF  LG+
Sbjct:  517 GKGRMIRQGSKIALLSFGTRLAECEKAADELAAHGLSTTIADARFMKPLDTELVLKLARDHEILITIEEGSVGGFGSHVAQFLTDQGALDSGMVKFRTMVLPDVFQDHDTPAAMYARAGLDAKGIVAKVFEALGK 651          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.157e-34
Identity = 78/139 (56.12%), Postives = 97/139 (69.78%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGT-VKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 416
            G+GRI+ EG  VALL  GT +     A+  L S+G+ +TVADARF KPLD  L+R LAK+HEVLIT+EEGS+GGFGS V+Q LA +GLLDGT +K+R +VLPD ++DH  P    AQAGL    I A V   LG+  EA
Sbjct:  498 GRGRIVREGTTVALLSLGTRLAEASKAAEQLASYGISVTVADARFAKPLDLDLVRRLAKNHEVLITIEEGSVGGFGSFVMQALAEEGLLDGTGLKFRSMVLPDTFLDHDKPEKLYAQAGLDAKGIVAKVLATLGRENEA 636          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHOPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxs PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.430e-34
Identity = 72/134 (53.73%), Postives = 93/134 (69.40%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGRI+ EG ++ALL +GT +  C  A+  L + GL  T+ADARF KPLD  L+  LA+ HE+L+T+EEGSIGGFGSHV+Q LA  G+LDG V+ R LVLPD ++DH +P    A+AGL    I   VF  LG+
Sbjct:  498 GKGRIVREGNKIALLSFGTRLAECEKAADELATLGLSTTIADARFMKPLDVELVLKLARDHEILLTIEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTPTAMYARAGLDAKGIVKKVFEALGK 631          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHILW (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dxs PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.430e-34
Identity = 73/134 (54.48%), Postives = 96/134 (71.64%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGRI+ EG +VALL +GT +  CL A+  L++ GL  TVADARF KPLDH LIR  A+ HE++ITVEEGS+GGFGS V+Q+L+ +GLLD  +K R LV+PD +++   P    A AGL  + I +TVF  LG+
Sbjct:  497 GKGRIVKEGTKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQFARHHEMVITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALGR 630          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BARHE (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella henselae GN=dxs PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.092e-34
Identity = 73/134 (54.48%), Postives = 96/134 (71.64%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGRIL EG R+AL+ +GT +   L A+  L + GL  TVADARF KPLD  L+R LA+ HEVL+T+EEG+IGGFG+H++QFLA +GLL+  +K R L LPD Y++HGS    L++ GL    I  TVF+ LG+
Sbjct:  497 GKGRILHEGNRIALVCFGTRISEVLVAADELSAEGLSTTVADARFAKPLDKDLMRRLAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLEHGLKVRTLKLPDEYLNHGSQEKVLSRIGLDAVGIVNTVFSALGR 630          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_BRASB3.760e-3553.731-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_RHOCS8.377e-3557.891-deoxy-D-xylulose-5-phosphate synthase OS=Rhodosp... [more]
DXS_RHOP51.429e-3455.151-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHIEC1.429e-3456.821-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_AGRRK1.429e-3456.301-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_BRAJA4.157e-3454.071-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_BEII94.157e-3456.121-deoxy-D-xylulose-5-phosphate synthase OS=Beijeri... [more]
DXS_RHOPB5.430e-3453.731-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHILW5.430e-3454.481-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_BARHE7.092e-3454.481-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
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