CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BARBK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dxs PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.092e-34
Identity = 76/142 (53.52%), Postives = 99/142 (69.72%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG-QTREALEI 425
            GKGR+L EG RVAL+ +GT +   L A+  L + G+  TVADARF KPLD  L+R LA+ HEV IT+EEG+IGGFG+HV+QFLA + LL+  +K R L LPD Y++HGSP   L++ GL    I   VF  LG +TR+ L+I
Sbjct:  497 GKGRVLREGSRVALVCFGTQLSEVLVAADELAAEGISTTVADARFAKPLDKDLMRRLAREHEVFITIEEGAIGGFGAHVLQFLAQEALLEHGLKVRTLRLPDEYLNHGSPEKILSRVGLDAKGIINAVFTSLGYETRKTLQI 638          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_MAGSA (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dxs PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.210e-33
Identity = 75/139 (53.96%), Postives = 92/139 (66.19%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREAL 419
            GKGR++ EG RVA+L  GT +   L A+  L + GL  TV DARF KPLD  LI  LA+ HEVLITVEEGS+GGFGSHV+  LA  G LD  +K RPL LPD +++H +PA Q  + GL  S I ATV   LG+ R  +
Sbjct:  504 GKGRVVREGNRVAILSLGTRLAEALKAADELAARGLAPTVVDARFMKPLDEELILRLAREHEVLITVEEGSVGGFGSHVLHLLASKGALDNGLKVRPLALPDVFVEHDAPAIQYEKIGLNASGIVATVLATLGEARSVV 642          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHOPT (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.580e-33
Identity = 73/134 (54.48%), Postives = 94/134 (70.15%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR++ +G +VALL +GT +     A+  L + GL  TVADARF KPLD  L+  LA+ HEVL+T+EEGSIGGFGSHV+Q LA  G+LDG VK R LVLPD ++DH +P    A+AGL    I   VF++LG+
Sbjct:  498 GKGRVIRQGNKVALLSFGTRLAEAEKAADELATLGLSTTVADARFMKPLDVELVLKLARDHEVLLTIEEGSIGGFGSHVMQTLAEHGMLDGEVKMRALVLPDVFMDHDNPVAMYARAGLDAKAIVKKVFDVLGK 631          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHOPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris GN=dxs PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.580e-33
Identity = 73/134 (54.48%), Postives = 94/134 (70.15%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR++ +G +VALL +GT +     A+  L + GL  TVADARF KPLD  L+  LA+ HEVL+T+EEGSIGGFGSHV+Q LA  G+LDG VK R LVLPD ++DH +P    A+AGL    I   VF++LG+
Sbjct:  498 GKGRVIRQGNKVALLSFGTRLAEAEKAADELATLGLSTTVADARFMKPLDVELVLKLARDHEVLLTIEEGSIGGFGSHVMQTLAEHGMLDGEVKMRALVLPDVFMDHDNPVAMYARAGLDAKAIVKKVFDVLGK 631          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHOPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=dxs PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.695e-33
Identity = 73/138 (52.90%), Postives = 92/138 (66.67%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 416
            GKGR++ +G +VALL +GT +  C  A+  L + GL  TVADARF KPLD  L+  LA  HE+LIT+EEGSIGGFG+HV+Q LA  G LDG VK R +VLPD ++DH +P    A AGL    I   VF  LG+  +A
Sbjct:  495 GKGRVIRQGNKVALLSFGTRLAECEKAAEELAALGLSTTVADARFMKPLDVDLVLKLANEHEILITIEEGSIGGFGTHVMQTLAEHGKLDGEVKMRAMVLPDVFLDHDTPTAMYANAGLDAKAIVKKVFEALGKEHKA 632          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHOP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=dxs PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.519e-33
Identity = 74/138 (53.62%), Postives = 92/138 (66.67%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 416
            GKGR++ +G +VALL +GT +  C  A+  L + GL  TVADARF KPLD  L+  LA  HE+LIT+EEGSIGGFGSHV+Q L+  G LDG VK R +VLPD ++DH +PA   A AGL    I   VF  LG+   A
Sbjct:  495 GKGRVIRQGNKVALLSFGTRLAECEKAAEELATLGLSTTVADARFMKPLDVDLVIKLANEHEILITIEEGSIGGFGSHVMQTLSDHGKLDGEVKMRAMVLPDVFLDHDTPAAMYAAAGLDAKAIVKKVFEALGKEHAA 632          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BART1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dxs PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.841e-33
Identity = 70/134 (52.24%), Postives = 94/134 (70.15%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR+L EG R+AL+ +GT +   L A+  L + GL  TVADARF KPLD  L+R LA+ HEVL+T+EEG+IGGFG+H++QFLA +GLL+  +K R L  PD Y++HGSP   L+  GL    I  TV  ++G+
Sbjct:  497 GKGRVLREGNRIALVCFGTRMSEVLRAADRLGAKGLSTTVADARFAKPLDKDLMRRLAREHEVLVTIEEGAIGGFGAHLLQFLAQEGLLEHGLKVRTLKFPDEYLNHGSPEKVLSTIGLDAMGIVNTVLTVVGR 630          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BARQU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella quintana GN=dxs PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.841e-33
Identity = 73/134 (54.48%), Postives = 93/134 (69.40%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR+L EG RVAL+ +GT +   L A+  L + GL  TVADARF KPLD  L+R LA  HEVL+ VEEG+IGGFG+H++QFLA +GLL+  +K R L  PD Y++HGSP   L++ GL    I  TVF  LG+
Sbjct:  497 GKGRVLREGSRVALVCFGTRMSEVLVAADALIAEGLSTTVADARFAKPLDKDLMRRLACEHEVLVAVEEGAIGGFGAHLLQFLAKEGLLEHGLKVRTLKFPDEYLNHGSPEKVLSRIGLDAVGIVNTVFTALGR 630          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_HYPNA (1-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomonas neptunium (strain ATCC 15444) GN=dxs PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.747e-32
Identity = 72/134 (53.73%), Postives = 91/134 (67.91%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR++ EG  +A+L YGT +Q  L A+ +L + GL  TVADARF KPLD+ LI  LA+ HEVL+T+EEGS GGFGS V++ LA  G LD  +K R + LPD + DH +PA    QAGLT  HIAA     LG+
Sbjct:  495 GKGRVVREGTSIAILSYGTRLQEALKAAEMLAAQGLSATVADARFAKPLDNELIERLAREHEVLVTIEEGSRGGFGSFVLEHLANCGGLDAGLKVRVMTLPDVFQDHDTPAAMYDQAGLTARHIAARAIEALGR 628          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SILST (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter sp. (strain TM1040) GN=dxs PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.979e-32
Identity = 69/136 (50.74%), Postives = 90/136 (66.18%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTR 410
            GKGRI+ EG RVALL +GT +     A+  L + G+  TVADARF KPLD  +I SLA+ HE LIT+EEG++GGFGSHV Q L+ + + D  +K+R +VLPD +ID  SP D    A +   HI A V ++LG  R
Sbjct:  501 GKGRIIEEGSRVALLSFGTRLGEVRKAAEALAARGITPTVADARFAKPLDRDMILSLAEKHEALITIEEGAVGGFGSHVAQLLSEEAVFDTGLKFRSMVLPDTFIDQASPKDMYDSAAMNAEHIEAKVLDVLGVAR 636          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_BARBK7.092e-3453.521-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_MAGSA1.210e-3353.961-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_RHOPT1.580e-3354.481-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOPA1.580e-3354.481-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOPS2.695e-3352.901-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOP23.519e-3353.621-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_BART17.841e-3352.241-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_BARQU7.841e-3354.481-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_HYPNA1.747e-3253.731-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomo... [more]
DXS_SILST2.979e-3250.741-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
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