CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ECO55 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain 55989 / EAEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 49/129 (37.98%), Postives = 68/129 (52.71%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +   GE++A+L +GT     L   A   +  L  T+ D RF KPLD ALI  +A SHE L+TVEE +I GG GS V + L         V    + LPD +I  G+  +  A+ GL  + + A +
Sbjct:  495 GKGIVKRRGEKLAILNFGT-----LMPDAAKVAESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLGAAGMEAKI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_DESVV (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCL-AASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 359
            G G +L EGE VA++  G+ V   L AA  L E  G   TV DAR+ KPL  A +  +   H+ L+ VEE ++ GGF S V++ LA    L G    R + LPD +++ G+  +     GL
Sbjct:  500 GVGEVLKEGEGVAVIAVGSRVHPSLEAAERLAEETGRHATVFDARWVKPLPEAQLLDIVARHDALLFVEENALAGGFSSAVLELLADRNALSGK-HIRRIGLPDEFVEQGTQKELRVSLGL 619          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_DESVH (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCL-AASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 359
            G G +L EGE VA++  G+ V   L AA  L E  G   TV DAR+ KPL  A +  +   H+ L+ VEE ++ GGF S V++ LA    L G    R + LPD +++ G+  +     GL
Sbjct:  500 GVGEVLKEGEGVAVIAVGSRVHPSLEAAERLAEETGRHATVFDARWVKPLPEAQLLDIVARHDALLFVEENALAGGFSSAVLELLADRNALSGK-HIRRIGLPDEFVEQGTQKELRVSLGL 619          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_STRGG (1-deoxy-D-xylulose-5-phosphate synthase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 45/124 (36.29%), Postives = 67/124 (54.03%), Query Frame = 3
Query:   36 VALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            V ++  G     CL  + LL++ G+  TV D R+ KP+D AL   LA+ H V++TVE+ S  GG GS V Q L   G+    V  R   +P  ++DH S  + +A+ GLT   IA  V  ++ +
Sbjct:  503 VLIVSVGALAPMCLEIADLLDAQGISSTVVDPRWVKPVDEAL-APLAERHRVVVTVEDNSRAGGVGSAVAQSLRDAGV---DVPLRDFGIPPVFLDHASRGEVMAEIGLTAPDIARQVTGLVAK 622          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SHIDS (1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +   GE++A+L +GT     L   A   +  L  T+ D RF KPLD  LI  +A SHE L+TVEE +I GG GS V + L         V    + LPD +I  G+  +  A+ GL  + + A +
Sbjct:  495 GKGTVKRRGEKLAILNFGT-----LMPEAAKVAESLNATLVDMRFVKPLDETLILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEHT (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GK  ++ +G +VA+L +GT +++     A L +  L  T+ + RF KPLD AL+  L  SH+V++T+E+ +I GG GS V ++LA        V    L +PD +I HG+  +   + GL    I   +
Sbjct:  495 GKADVVKQGAKVAILSFGTLLEN-----AQLAADELNATLVNMRFIKPLDTALLDELINSHDVIVTLEDNAISGGAGSAVNEYLATQ---KAQVSILNLGIPDEFIKHGTQDEMHDEMGLGEQGILTAI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_NEIMB (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria meningitidis serogroup B GN=dxs PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG I  EGE+ A + +G+ V     A AL  +  L  TVAD RF KP+D  LI  LA+SH+ ++T+EE +  GG G  V++ LA  G+    +    L + D    HG P   L   GL+   +   V
Sbjct:  506 GKGIIRREGEKTAFIAFGSMV-----APALAVAEKLNATVADMRFVKPIDEELIVRLARSHDRIVTLEENAEQGGAGGAVLEVLAKHGICKPVLL---LGVADTVTGHGDPKKLLDDLGLSAEAVERRV 626          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_NEIM0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria meningitidis serogroup C (strain 053442) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG I  EGE+ A + +G+ V     A AL  +  L  TVAD RF KP+D  LI  LA+SH+ ++T+EE +  GG G  V++ LA  G+    +    L + D    HG P   L   GL+   +   V
Sbjct:  504 GKGIIRREGEKTAFIAFGSMV-----APALAVAEKLNATVADMRFVKPIDEELIVRLARSHDRIVTLEENAEQGGAGGAVLEVLAKHGICKPVLL---LGVADTVTGHGDPKKLLDDLGLSAEAVERRV 624          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_EDWI9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Edwardsiella ictaluri (strain 93-146) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFL 251
            GKG +   GER+A+L +G+ +   L A+  L +     +VAD RF KPLD AL+RSLA+ HE L+T+EE ++ GG GS V + L
Sbjct:  495 GKGVLRRRGERIAILNFGSLLPQALEAAERLNA-----SVADMRFVKPLDDALVRSLAEQHEYLVTLEENAVMGGAGSGVNELL 573          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ECO5E (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +   GE++A+L +GT     L   A   +  L  T+ D RF KPLD  LI  +A SHE L+TVEE +I GG GS V + L         V    + LPD +I  G+  +  A+ GL  + + A +
Sbjct:  495 GKGIVKRRGEKLAILNFGT-----LMPEAAKVAESLNATLVDMRFVKPLDETLILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKI 615          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_ECO555.842e-1237.981-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_DESVV5.842e-1238.021-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS_DESVH5.842e-1238.021-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS_STRGG7.630e-1236.291-deoxy-D-xylulose-5-phosphate synthase OS=Strepto... [more]
DXS_SHIDS7.630e-1237.211-deoxy-D-xylulose-5-phosphate synthase OS=Shigell... [more]
DXS_PSEHT7.630e-1234.111-deoxy-D-xylulose-5-phosphate synthase OS=Pseudoa... [more]
DXS_NEIMB9.965e-1237.211-deoxy-D-xylulose-5-phosphate synthase OS=Neisser... [more]
DXS_NEIM09.965e-1237.211-deoxy-D-xylulose-5-phosphate synthase OS=Neisser... [more]
DXS_EDWI91.301e-1146.431-deoxy-D-xylulose-5-phosphate synthase OS=Edwards... [more]
DXS_ECO5E1.301e-1137.211-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
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