CF417125
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ECO55 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli (strain 55989 / EAEC) GN=dxs PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12 Identity = 49/129 (37.98%), Postives = 68/129 (52.71%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + GE++A+L +GT L A + L T+ D RF KPLD ALI +A SHE L+TVEE +I GG GS V + L V + LPD +I G+ + A+ GL + + A + Sbjct: 495 GKGIVKRRGEKLAILNFGT-----LMPDAAKVAESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLGAAGMEAKI 615
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_DESVV (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=dxs PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12 Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCL-AASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 359 G G +L EGE VA++ G+ V L AA L E G TV DAR+ KPL A + + H+ L+ VEE ++ GGF S V++ LA L G R + LPD +++ G+ + GL Sbjct: 500 GVGEVLKEGEGVAVIAVGSRVHPSLEAAERLAEETGRHATVFDARWVKPLPEAQLLDIVARHDALLFVEENALAGGFSSAVLELLADRNALSGK-HIRRIGLPDEFVEQGTQKELRVSLGL 619
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_DESVH (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=dxs PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12 Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCL-AASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 359 G G +L EGE VA++ G+ V L AA L E G TV DAR+ KPL A + + H+ L+ VEE ++ GGF S V++ LA L G R + LPD +++ G+ + GL Sbjct: 500 GVGEVLKEGEGVAVIAVGSRVHPSLEAAERLAEETGRHATVFDARWVKPLPEAQLLDIVARHDALLFVEENALAGGFSSAVLELLADRNALSGK-HIRRIGLPDEFVEQGTQKELRVSLGL 619
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_STRGG (1-deoxy-D-xylulose-5-phosphate synthase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=dxs PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12 Identity = 45/124 (36.29%), Postives = 67/124 (54.03%), Query Frame = 3 Query: 36 VALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404 V ++ G CL + LL++ G+ TV D R+ KP+D AL LA+ H V++TVE+ S GG GS V Q L G+ V R +P ++DH S + +A+ GLT IA V ++ + Sbjct: 503 VLIVSVGALAPMCLEIADLLDAQGISSTVVDPRWVKPVDEAL-APLAERHRVVVTVEDNSRAGGVGSAVAQSLRDAGV---DVPLRDFGIPPVFLDHASRGEVMAEIGLTAPDIARQVTGLVAK 622
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SHIDS (1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dxs PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12 Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + GE++A+L +GT L A + L T+ D RF KPLD LI +A SHE L+TVEE +I GG GS V + L V + LPD +I G+ + A+ GL + + A + Sbjct: 495 GKGTVKRRGEKLAILNFGT-----LMPEAAKVAESLNATLVDMRFVKPLDETLILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKI 615
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEHT (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dxs PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12 Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GK ++ +G +VA+L +GT +++ A L + L T+ + RF KPLD AL+ L SH+V++T+E+ +I GG GS V ++LA V L +PD +I HG+ + + GL I + Sbjct: 495 GKADVVKQGAKVAILSFGTLLEN-----AQLAADELNATLVNMRFIKPLDTALLDELINSHDVIVTLEDNAISGGAGSAVNEYLATQ---KAQVSILNLGIPDEFIKHGTQDEMHDEMGLGEQGILTAI 615
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_NEIMB (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria meningitidis serogroup B GN=dxs PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12 Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG I EGE+ A + +G+ V A AL + L TVAD RF KP+D LI LA+SH+ ++T+EE + GG G V++ LA G+ + L + D HG P L GL+ + V Sbjct: 506 GKGIIRREGEKTAFIAFGSMV-----APALAVAEKLNATVADMRFVKPIDEELIVRLARSHDRIVTLEENAEQGGAGGAVLEVLAKHGICKPVLL---LGVADTVTGHGDPKKLLDDLGLSAEAVERRV 626
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_NEIM0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria meningitidis serogroup C (strain 053442) GN=dxs PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12 Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG I EGE+ A + +G+ V A AL + L TVAD RF KP+D LI LA+SH+ ++T+EE + GG G V++ LA G+ + L + D HG P L GL+ + V Sbjct: 504 GKGIIRREGEKTAFIAFGSMV-----APALAVAEKLNATVADMRFVKPIDEELIVRLARSHDRIVTLEENAEQGGAGGAVLEVLAKHGICKPVLL---LGVADTVTGHGDPKKLLDDLGLSAEAVERRV 624
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_EDWI9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Edwardsiella ictaluri (strain 93-146) GN=dxs PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11 Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFL 251 GKG + GER+A+L +G+ + L A+ L + +VAD RF KPLD AL+RSLA+ HE L+T+EE ++ GG GS V + L Sbjct: 495 GKGVLRRRGERIAILNFGSLLPQALEAAERLNA-----SVADMRFVKPLDDALVRSLAEQHEYLVTLEENAVMGGAGSGVNELL 573
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ECO5E (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=dxs PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11 Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + GE++A+L +GT L A + L T+ D RF KPLD LI +A SHE L+TVEE +I GG GS V + L V + LPD +I G+ + A+ GL + + A + Sbjct: 495 GKGIVKRRGEKLAILNFGT-----LMPEAAKVAESLNATLVDMRFVKPLDETLILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKI 615 The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 386
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bpback to top |