CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ECO27 (1-deoxy-D-xylulose-5-phosphate synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +   GE++A+L +GT     L   A   +  L  T+ D RF KPLD ALI  +A SHE L+TVEE +I GG GS V + L         V    + L D +I  G+  +  A+ GL  + + A +
Sbjct:  495 GKGIVKRRGEKLAILNFGT-----LMPEAAKVAESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLLDFFIPQGTQEEMRAELGLDATGMEAKI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BACTN (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacteroides thetaiotaomicron GN=dxs PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESH-GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 359
            GKGR L +G+ +A++  G       +A A  ES  G  +   D RF KPLD  L+  + ++   ++T+E+G+I GG GS V++F+A D     TVK   + +PD+++ HG+ A+     G+
Sbjct:  503 GKGRKLKDGKDIAVISIGPIGNKARSAIARAESESGRSIAHYDLRFLKPLDEELLHEVGRTFRHIVTIEDGTIQGGMGSAVLEFMA-DHEYTPTVK--RIGIPDKFVQHGTVAELYQLCGM 620          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SALPK (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 46/129 (35.66%), Postives = 66/129 (51.16%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +   GE++A+L +GT     L   A   +  L  T+ D RF KPLD  LI  +A  H+ L+T+EE +I GG GS V + L         V    + LPD +I  G+  +  A+ GL  + I A +
Sbjct:  495 GKGLVKRHGEKLAILNFGT-----LMPEAAKVAEALNATLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDLFIPQGTQEEARAELGLDAAGIEAKI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SALPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Salmonella paratyphi A GN=dxs PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 46/129 (35.66%), Postives = 66/129 (51.16%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +   GE++A+L +GT     L   A   +  L  T+ D RF KPLD  LI  +A  H+ L+T+EE +I GG GS V + L         V    + LPD +I  G+  +  A+ GL  + I A +
Sbjct:  495 GKGLVKRHGEKLAILNFGT-----LMPEAAKVAEALNATLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAGSGVNEVLMAH---RKPVPVLNIGLPDLFIPQGTQEEARAELGLDAAGIEAKI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PARD8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIA 377
            GKG+ L +G+ +A+L  G      + A  +++   + +   D  + KPLD  L+  + + +  +ITVE G I GGFGS V++F+A +G    T   + + +PD +I+HGS  +     G+    IA
Sbjct:  503 GKGKKLRDGDDIAVLSIGPIGNEVIKAIEMVKEERVSIAHYDMIYLKPLDEELLHEIGQKYNRIITVENGVIKGGFGSAVLEFMADNGY---TPHVKRIGVPDAFIEHGSIPELYQLCGMDAESIA 625          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_FRAP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTR 410
            GK +++ +G RVA+L +GT +     A+ L + +   +TV D RF KPLD  +I  + ++H ++ T+EE SI GG GS V +++  +  L   +  R   L D ++ HG+    L  + L+ + IA  +  +L   +
Sbjct:  488 GKAKLVKKGSRVAILNFGTLLP---LANQLADKY--HITVVDMRFVKPLDEQMINQICQNHNIVFTLEESSIAGGAGSAVNEYIFAND-LSKNITVRNFGLKDEFLTHGTKDLLLDYSNLSFNKIAEVLEKLLSHKK 618          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_ECO276.459e-1137.211-deoxy-D-xylulose-5-phosphate synthase OS=Escheri... [more]
DXS_BACTN6.459e-1134.711-deoxy-D-xylulose-5-phosphate synthase OS=Bactero... [more]
DXS_SALPK8.435e-1135.661-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]
DXS_SALPA8.435e-1135.661-deoxy-D-xylulose-5-phosphate synthase OS=Salmone... [more]
DXS_PARD88.435e-1131.751-deoxy-D-xylulose-5-phosphate synthase OS=Parabac... [more]
DXS_FRAP28.435e-1131.391-deoxy-D-xylulose-5-phosphate synthase OS=Francis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
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