CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_NITWN (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dxs PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.979e-32
Identity = 71/135 (52.59%), Postives = 93/135 (68.89%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLD-GTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGRI+ +G ++ALL +GT +  C  A+  L +HGL  T+ADARF KPLD  L   LA+ H+VLIT+EEGSIGGFGSHV+Q L  +G LD G V+ R ++LPD ++DH +P    A+AGL    I A VF  LG+
Sbjct:  522 GKGRIVRQGSKIALLSFGTRLAECEKAADELAAHGLSTTIADARFMKPLDVDLALKLAREHDVLITIEEGSIGGFGSHVMQTLMDNGALDGGLVRVRSMILPDEFLDHDTPTAMYARAGLDAKGIVAKVFEALGK 656          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SILPO (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter pomeroyi GN=dxs PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.082e-32
Identity = 69/133 (51.88%), Postives = 91/133 (68.42%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401
            GKGR++ +G RVALL +GT +     A+  L + G+  T+ADARF KPLD  LI +LA  HE LIT+EEG++GGFGSHV Q LA +G+ D  +K+R +VLPD +ID  SPAD  A AG+    I A V ++LG
Sbjct:  501 GKGRMIQKGARVALLSFGTRLTEVQKAAEALAARGITPTIADARFAKPLDRDLILNLAHDHEALITIEEGAVGGFGSHVAQLLADEGVFDHGLKFRSMVLPDIFIDQSSPADMYAVAGMNAPQIEAKVLDVLG 633          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_NITHX (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dxs PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.082e-32
Identity = 73/135 (54.07%), Postives = 91/135 (67.41%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLD-GTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGRI+ +G +VALL  GT +  C  A+  L +HGL  T+ADARF KPLD  L+  LA+ H+VLIT+EEGSIGGFGSHV+Q LA  G LD G V+ R +VLPD ++DH +P    A  GL    I A VF  LG+
Sbjct:  524 GKGRIVRQGSKVALLSLGTRLAECEKAADELAAHGLSTTIADARFMKPLDVDLVLKLARDHDVLITIEEGSIGGFGSHVMQTLAEHGALDSGQVRVRAMVLPDEFLDHDTPNAMYASVGLDDRGIVAKVFEALGK 658          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_AZOC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dxs PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.082e-32
Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 359
            GKGR++ EG+ +A L  GT + +CL  +  L S G+  TVADARF KP+D  LI  LA++H  L+ VEEGS+GGFGS V+QFL+ +GL+DG +K R L LPD YIDH +PA QLA+AGL
Sbjct:  496 GKGRVVREGQDIAFLSLGTRLAACLDVAERLSSLGISATVADARFAKPIDRELIAHLARTHAALVVVEEGSVGGFGSQVLQFLSDEGLMDGGLKVRALTLPDTYIDHDTPAAQLAEAGL 614          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_AGRVS (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dxs PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.082e-32
Identity = 76/139 (54.68%), Postives = 95/139 (68.35%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREAL 419
            GKGRI+ EG +VALL +GT +  CL A+  L++ GL  TVADARF KPLD  LIR LA+ H VLITVEEG++GGFGS V+  LA +GLLD  +K R LVLPD ++D   P     +AGL    I +TVF  L  +R+AL
Sbjct:  497 GKGRIIKEGSKVALLSFGTRLAECLVAAEDLDAAGLPTTVADARFAKPLDLDLIRQLARHHAVLITVEEGAVGGFGSQVLHMLANEGLLDHGLKVRSLVLPDLWMDQAKPDVMYEKAGLDAKGIVSTVFTAL--SRDAL 633          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS1_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.669e-32
Identity = 71/132 (53.79%), Postives = 88/132 (66.67%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398
            GKGRI+ EG+ VALL  GT +QSCL A  +L + GL  TVADARF KP D  L+  LA  HEVLI VEEG+IGGFG+HV  +L   GLLDG +K R L +PDR+ +H +P  Q A+AG+    I   V + L
Sbjct:  499 GKGRIVREGKGVALLSIGTRLQSCLEACEILAARGLTPTVADARFLKPFDEELVADLAARHEVLIVVEEGAIGGFGAHVATWLTNQGLLDGGLKLRALHIPDRFFEHDAPEVQCAKAGIDAQAITTAVLDAL 630          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS1_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Jannaschia sp. (strain CCS1) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.132e-31
Identity = 68/133 (51.13%), Postives = 87/133 (65.41%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401
            GKGR++ EG RVA+L +GT ++    A+  L   G+  T+ADARF KPLD ALI  LA+ HE LITVEEG++GGFGSHV   LA + + D  +K+R +VLPD +ID  SP D  A AG+    I A V   LG
Sbjct:  499 GKGRMISEGNRVAILNFGTRLKEVQEAAETLSQRGITPTIADARFAKPLDEALILQLARHHEALITVEEGAVGGFGSHVAHLLAENAVFDTGIKYRSMVLPDIFIDQASPKDMYAVAGMNAEDIVAKVLTTLG 631          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS2_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.479e-31
Identity = 68/133 (51.13%), Postives = 88/133 (66.17%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401
            GKGRI+ EG RVA+L +GT +     A   L + G+  T+ADARF KPLD  +I  L  +HE LITVEEG+IGGFGSHV Q L+ +G+ D   K+R +VLPD +ID  SPAD  A AG+  + I   V ++LG
Sbjct:  501 GKGRIITEGTRVAILSFGTRLAEVQKAGEALAARGITPTIADARFAKPLDREMILDLVANHEALITVEEGAIGGFGSHVAQLLSDEGVFDTGFKYRSMVLPDIFIDQSSPADMYAVAGMNAADIETKVLSVLG 633          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS2_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.479e-31
Identity = 72/132 (54.55%), Postives = 88/132 (66.67%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398
            GKGRI+ EG+ VALL  GT +QSCL A  +L + GL  TVADARF KP D  L+  LA  HEVLI VEEG+IGGF SHV  +LA  GLLDG +K R L +PDR+ +H +P  Q A+AG+    I   V + L
Sbjct:  499 GKGRIVREGKGVALLSIGTRLQSCLEACEILAARGLTPTVADARFLKPFDEELVADLAARHEVLIVVEEGAIGGFCSHVATWLANQGLLDGGLKLRALHIPDRFFEHDAPEVQCAKAGIDAQAITTAVLDAL 630          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_XANP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dxs PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.757e-30
Identity = 75/145 (51.72%), Postives = 96/145 (66.21%), Query Frame = 3
Query:    3 GKGRILI---EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLD-GTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEI 425
            GKGRI+    EG+ +ALL  GT + +CL A+  LE+ G  +TVADARF KPLD  L+  LA  H  L+TVEEGS+GGFGSHV+Q +  +GLLD G VK R +VLPD YID  + A QLA AGL    I A V  +LG+ +  + +
Sbjct:  496 GKGRIVHGTGEGD-IALLSLGTRLAACLDAAERLEAAGFTVTVADARFAKPLDRELVLKLAAGHGALVTVEEGSVGGFGSHVLQLVTDEGLLDRGAVKVRAMVLPDIYIDQETQARQLAAAGLDADAIVAKVEGLLGKAKAGVSL 639          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_NITWN2.979e-3252.591-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS_SILPO5.082e-3251.881-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS_NITHX5.082e-3254.071-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS_AZOC55.082e-3256.301-deoxy-D-xylulose-5-phosphate synthase OS=Azorhiz... [more]
DXS_AGRVS5.082e-3254.681-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS1_RHORT8.669e-3253.791-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS1_JANSC1.132e-3151.131-deoxy-D-xylulose-5-phosphate synthase 1 OS=Janna... [more]
DXS2_ROSDO1.479e-3151.131-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseo... [more]
DXS2_RHORT1.479e-3154.551-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS_XANP24.757e-3051.721-deoxy-D-xylulose-5-phosphate synthase OS=Xanthob... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
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