CF417125
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_NOVAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dxs PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 6.212e-30 Identity = 67/132 (50.76%), Postives = 88/132 (66.67%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398 GKGRI+ +G +VALL GT + L A+ L++ GL TVAD RF KPLD ALIR L +H+V++TVEEGSIGG G+HV+ + +GL+DG +K R + LPD + DH +P Q +AGL HI TV L Sbjct: 497 GKGRIIRQGSKVALLSLGTRLAEALKAADQLDARGLSTTVADLRFAKPLDVALIRQLMTTHDVIVTVEEGSIGGLGAHVLTMASDEGLVDGGLKIRTMRLPDLFQDHDAPEKQYDEAGLNAPHIVDTVLKAL 628
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_GLUOX (1-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans GN=dxs PE=3 SV=2) HSP 1 Score: 129.413 bits (324), Expect = 1.384e-29 Identity = 73/140 (52.14%), Postives = 89/140 (63.57%), Query Frame = 3 Query: 3 GKGRILIEGER-------VALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401 GKGRI+ E R VA+L G + L A+ L + G+ +TVADARF KP+D AL+ LA+ HEV IT+EEG+IGGF S VVQ LA GLLD VK+RP+ LPDRYIDH + Q AGLT HI T + LG Sbjct: 514 GKGRIVREARRAPNARGGVAILSLGPRMHESLRAADQLAAQGVPVTVADARFAKPIDKALVEDLARQHEVFITIEEGAIGGFSSLVVQHLAETGLLD-KVKFRPMALPDRYIDHNTQDAQYEDAGLTAPHIVRTAADALG 652
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PELUB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelagibacter ubique GN=dxs PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.808e-29 Identity = 64/142 (45.07%), Postives = 95/142 (66.90%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIM 428 GKGR++ EG++V +L GT ++ C A+A L++ G+ T+ DARF KPLD LI A+ HE +ITVEEGSIGGFGSHV L+ G+ D +K+R ++LPD +I+ SP AGL S I+ + +IL T+E+++++ Sbjct: 495 GKGRVIQEGKQVCILSIGTRLEECKIAAAELKNKGIESTIVDARFAKPLDQELILKCAREHEAMITVEEGSIGGFGSHVENLLSEKGIFDKGLKFRTMILPDIFIEQDSPKKMYDVAGLNASQISKKILDIL-FTKESIKVV 635
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SPHWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dxs PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 3.083e-29 Identity = 68/140 (48.57%), Postives = 91/140 (65.00%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 422 GKGRI+ EG+ VALL GT + L A+ L++ GL TVAD RF KPLD A+I++L SHEV +T+EEG+IGG G+HV+ + GL+DG +K R + LPD + +H P Q A+AGL I ATV L + + LE Sbjct: 497 GKGRIVREGKTVALLSLGTRLGEALRAADQLDALGLSTTVADLRFAKPLDEAMIQTLLTSHEVAVTIEEGAIGGLGAHVLTLASDLGLIDGGLKLRTMRLPDAFQEHDKPEKQYAEAGLDAESIVATVLAALHRNSKGLE 636
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_MARMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Maricaulis maris (strain MCS10) GN=dxs PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 3.083e-29 Identity = 69/140 (49.29%), Postives = 87/140 (62.14%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 422 GKGRI+ EG R+A+L GT ++ L A+ L + G TVADARF KPLD LI LA+ HEVLITVEEG++GGFG+ V+ LA G LD ++ R L LPD + D +P D AGL HIAA +G+ A E Sbjct: 495 GKGRIVREGSRIAILSLGTRLEESLKAADALAAQGFSTTVADARFAKPLDEDLILRLAREHEVLITVEEGAVGGFGAFVLHMLADKGALDRGLRIRTLTLPDVFQDQEAPFDMYETAGLNARHIAAKALEAMGKDDAAAE 634
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS1_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs1 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 4.027e-29 Identity = 64/136 (47.06%), Postives = 88/136 (64.71%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTR 410 G+GR++ EG VA+L +G + L A+ LLE+ G+ +TVADARF +PLD LI L + H L+TVE+G++GGFG+HV+ +LA G DG + R + LPDR+I+ SP D A AGL IAAT L + R Sbjct: 500 GRGRVVREGTDVAILSFGAHLHEALQAAKLLEAEGVSVTVADARFSRPLDTGLIDQLVRHHAALVTVEQGAMGGFGAHVMHYLANSGGFDGGLALRVMTLPDRFIEQASPEDMYADAGLRAEDIAATARGALARGR 635
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS2_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs2 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 5.259e-29 Identity = 66/133 (49.62%), Postives = 83/133 (62.41%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401 G+GR++ EG R+ALL +GT + A+ L + G+ TVADARF KPLD LI LA HE LIT+EEG+IGGFGSHV Q LA G+ D ++R +VLPD +IDH S A AGL + I LG Sbjct: 497 GRGRVVSEGTRIALLSFGTRLAEVQVAAEALAARGISPTVADARFAKPLDRDLILQLAAHHEALITIEEGAIGGFGSHVAQLLAEAGVFDRGFRYRSMVLPDTFIDHNSAEVMYATAGLNAADIERKALETLG 629
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS1_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs1 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 6.869e-29 Identity = 65/135 (48.15%), Postives = 92/135 (68.15%), Query Frame = 3 Query: 3 GKGRILIEGE-RVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404 GKGR++ EG+ VA+L GT + C AA+ +LE+ G+ T+ADARF KPLD ALI +L ++H+ LITVE+G++ GFG+ V+Q +A +GLLD K R + LPDR+ID +PA+ AGL I V +LG+ Sbjct: 499 GKGRMIREGDGEVAILSLGTLLSDCEAAARILEAEGINATIADARFAKPLDMALIANLVQTHKALITVEQGAMAGFGAMVLQSMAAEGLLDLGCKVRTMCLPDRFIDQAAPAEMYRDAGLDTMGIVEQVTRVLGR 633
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.530e-28 Identity = 65/140 (46.43%), Postives = 88/140 (62.86%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 422 GKGRI+ G +VALL GT ++ A+ LE+ GL T+AD RF KPLD LI L K+HEV++T+EE SIGG G+HV+ + + +GL D +K R + LPD +I+ +P Q +AGLT HI TV L Q +E Sbjct: 497 GKGRIVKHGSKVALLSLGTRLEEAKRAADELEAKGLSTTIADMRFAKPLDTELIAQLMKNHEVVVTIEEASIGGLGAHVLTYASDEGLTDAGLKIRTMRLPDAFIEQDAPEKQYDEAGLTAPHIVDTVLKALRQNSAGVE 636
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHOCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodobacter capsulatus GN=dxs PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.295e-27 Identity = 62/127 (48.82%), Postives = 84/127 (66.14%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAAT 383 GKGR++ EG VA+L +G + L A+ +LE+ G+ TVADARFC+PLD LI L + H LIT+E+G++GGFG+ V+ +LA G L+ R + LPD YIDHGSP + A AGLT + I T Sbjct: 498 GKGRVMTEGTEVAILSFGAHLAQALKAAEMLEAEGVSTTVADARFCRPLDTDLIDRLIEGHAALITLEQGAMGGFGAMVLHYLARTGQLEKGRAIRTMTLPDCYIDHGSPEEMYAWAGLTANDIRDT 624 The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 386
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bpback to top |