CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7251 contig Csv1_Contig7251:1281..1888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_NOVAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dxs PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.212e-30
Identity = 67/132 (50.76%), Postives = 88/132 (66.67%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNIL 398
            GKGRI+ +G +VALL  GT +   L A+  L++ GL  TVAD RF KPLD ALIR L  +H+V++TVEEGSIGG G+HV+   + +GL+DG +K R + LPD + DH +P  Q  +AGL   HI  TV   L
Sbjct:  497 GKGRIIRQGSKVALLSLGTRLAEALKAADQLDARGLSTTVADLRFAKPLDVALIRQLMTTHDVIVTVEEGSIGGLGAHVLTMASDEGLVDGGLKIRTMRLPDLFQDHDAPEKQYDEAGLNAPHIVDTVLKAL 628          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_GLUOX (1-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans GN=dxs PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.384e-29
Identity = 73/140 (52.14%), Postives = 89/140 (63.57%), Query Frame = 3
Query:    3 GKGRILIEGER-------VALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401
            GKGRI+ E  R       VA+L  G  +   L A+  L + G+ +TVADARF KP+D AL+  LA+ HEV IT+EEG+IGGF S VVQ LA  GLLD  VK+RP+ LPDRYIDH +   Q   AGLT  HI  T  + LG
Sbjct:  514 GKGRIVREARRAPNARGGVAILSLGPRMHESLRAADQLAAQGVPVTVADARFAKPIDKALVEDLARQHEVFITIEEGAIGGFSSLVVQHLAETGLLD-KVKFRPMALPDRYIDHNTQDAQYEDAGLTAPHIVRTAADALG 652          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PELUB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelagibacter ubique GN=dxs PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.808e-29
Identity = 64/142 (45.07%), Postives = 95/142 (66.90%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIM 428
            GKGR++ EG++V +L  GT ++ C  A+A L++ G+  T+ DARF KPLD  LI   A+ HE +ITVEEGSIGGFGSHV   L+  G+ D  +K+R ++LPD +I+  SP      AGL  S I+  + +IL  T+E+++++
Sbjct:  495 GKGRVIQEGKQVCILSIGTRLEECKIAAAELKNKGIESTIVDARFAKPLDQELILKCAREHEAMITVEEGSIGGFGSHVENLLSEKGIFDKGLKFRTMILPDIFIEQDSPKKMYDVAGLNASQISKKILDIL-FTKESIKVV 635          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SPHWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dxs PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.083e-29
Identity = 68/140 (48.57%), Postives = 91/140 (65.00%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 422
            GKGRI+ EG+ VALL  GT +   L A+  L++ GL  TVAD RF KPLD A+I++L  SHEV +T+EEG+IGG G+HV+   +  GL+DG +K R + LPD + +H  P  Q A+AGL    I ATV   L +  + LE
Sbjct:  497 GKGRIVREGKTVALLSLGTRLGEALRAADQLDALGLSTTVADLRFAKPLDEAMIQTLLTSHEVAVTIEEGAIGGLGAHVLTLASDLGLIDGGLKLRTMRLPDAFQEHDKPEKQYAEAGLDAESIVATVLAALHRNSKGLE 636          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_MARMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Maricaulis maris (strain MCS10) GN=dxs PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.083e-29
Identity = 69/140 (49.29%), Postives = 87/140 (62.14%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 422
            GKGRI+ EG R+A+L  GT ++  L A+  L + G   TVADARF KPLD  LI  LA+ HEVLITVEEG++GGFG+ V+  LA  G LD  ++ R L LPD + D  +P D    AGL   HIAA     +G+   A E
Sbjct:  495 GKGRIVREGSRIAILSLGTRLEESLKAADALAAQGFSTTVADARFAKPLDEDLILRLAREHEVLITVEEGAVGGFGAFVLHMLADKGALDRGLRIRTLTLPDVFQDQEAPFDMYETAGLNARHIAAKALEAMGKDDAAAE 634          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS1_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.027e-29
Identity = 64/136 (47.06%), Postives = 88/136 (64.71%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTR 410
            G+GR++ EG  VA+L +G  +   L A+ LLE+ G+ +TVADARF +PLD  LI  L + H  L+TVE+G++GGFG+HV+ +LA  G  DG +  R + LPDR+I+  SP D  A AGL    IAAT    L + R
Sbjct:  500 GRGRVVREGTDVAILSFGAHLHEALQAAKLLEAEGVSVTVADARFSRPLDTGLIDQLVRHHAALVTVEQGAMGGFGAHVMHYLANSGGFDGGLALRVMTLPDRFIEQASPEDMYADAGLRAEDIAATARGALARGR 635          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS2_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.259e-29
Identity = 66/133 (49.62%), Postives = 83/133 (62.41%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401
            G+GR++ EG R+ALL +GT +     A+  L + G+  TVADARF KPLD  LI  LA  HE LIT+EEG+IGGFGSHV Q LA  G+ D   ++R +VLPD +IDH S     A AGL  + I       LG
Sbjct:  497 GRGRVVSEGTRIALLSFGTRLAEVQVAAEALAARGISPTVADARFAKPLDRDLILQLAAHHEALITIEEGAIGGFGSHVAQLLAEAGVFDRGFRYRSMVLPDTFIDHNSAEVMYATAGLNAADIERKALETLG 629          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS1_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.869e-29
Identity = 65/135 (48.15%), Postives = 92/135 (68.15%), Query Frame = 3
Query:    3 GKGRILIEGE-RVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 404
            GKGR++ EG+  VA+L  GT +  C AA+ +LE+ G+  T+ADARF KPLD ALI +L ++H+ LITVE+G++ GFG+ V+Q +A +GLLD   K R + LPDR+ID  +PA+    AGL    I   V  +LG+
Sbjct:  499 GKGRMIREGDGEVAILSLGTLLSDCEAAARILEAEGINATIADARFAKPLDMALIANLVQTHKALITVEQGAMAGFGAMVLQSMAAEGLLDLGCKVRTMCLPDRFIDQAAPAEMYRDAGLDTMGIVEQVTRVLGR 633          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.530e-28
Identity = 65/140 (46.43%), Postives = 88/140 (62.86%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 422
            GKGRI+  G +VALL  GT ++    A+  LE+ GL  T+AD RF KPLD  LI  L K+HEV++T+EE SIGG G+HV+ + + +GL D  +K R + LPD +I+  +P  Q  +AGLT  HI  TV   L Q    +E
Sbjct:  497 GKGRIVKHGSKVALLSLGTRLEEAKRAADELEAKGLSTTIADMRFAKPLDTELIAQLMKNHEVVVTIEEASIGGLGAHVLTYASDEGLTDAGLKIRTMRLPDAFIEQDAPEKQYDEAGLTAPHIVDTVLKALRQNSAGVE 636          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_RHOCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodobacter capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.295e-27
Identity = 62/127 (48.82%), Postives = 84/127 (66.14%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAAT 383
            GKGR++ EG  VA+L +G  +   L A+ +LE+ G+  TVADARFC+PLD  LI  L + H  LIT+E+G++GGFG+ V+ +LA  G L+     R + LPD YIDHGSP +  A AGLT + I  T
Sbjct:  498 GKGRVMTEGTEVAILSFGAHLAQALKAAEMLEAEGVSTTVADARFCRPLDTDLIDRLIEGHAALITLEQGAMGGFGAMVLHYLARTGQLEKGRAIRTMTLPDCYIDHGSPEEMYAWAGLTANDIRDT 624          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_NOVAD6.212e-3050.761-deoxy-D-xylulose-5-phosphate synthase OS=Novosph... [more]
DXS_GLUOX1.384e-2952.141-deoxy-D-xylulose-5-phosphate synthase OS=Glucono... [more]
DXS_PELUB1.808e-2945.071-deoxy-D-xylulose-5-phosphate synthase OS=Pelagib... [more]
DXS_SPHWW3.083e-2948.571-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_MARMM3.083e-2949.291-deoxy-D-xylulose-5-phosphate synthase OS=Maricau... [more]
DXS1_RHOS44.027e-2947.061-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS2_RHOS45.259e-2949.621-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS1_ROSDO6.869e-2948.151-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseo... [more]
DXS_ERYLH1.530e-2846.431-deoxy-D-xylulose-5-phosphate synthase OS=Erythro... [more]
DXS_RHOCA1.295e-2748.821-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoba... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
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