CF417125
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CAUSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter sp. (strain K31) GN=dxs PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.886e-27 Identity = 67/133 (50.38%), Postives = 84/133 (63.16%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401 GKGRI+ EG VA++ GT + CL A+ LL + GL TVADARF KPLD ++ LA+ HE +ITVEEG++GGFG+ V+Q LA G LD +K R LVLPD + D P AQAGL I + LG Sbjct: 495 GKGRIVREGTSVAIVSLGTRLAECLKAADLLAARGLSATVADARFAKPLDVDMLLRLAREHEAIITVEEGAMGGFGAFVLQALATHGALDRGLKIRTLVLPDVFQDQDKPDLMYAQAGLDAEGILRGALSALG 627
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS2_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Jannaschia sp. (strain CCS1) GN=dxs2 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.886e-27 Identity = 64/133 (48.12%), Postives = 81/133 (60.90%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401 GKGR++ +G VA+L +G ++ A+ LE+ GL +TVADARF KPLD LI L H LITVE+G++ GFG V+ LA G LDG R L LPDR+ID SPA+ A AGLT IA +G Sbjct: 496 GKGRVIQDGHDVAILSFGAHLEEAKDAATALEARGLSVTVADARFAKPLDTTLIDDLMTKHSALITVEQGAVLGFGGLVLHHLAATGQLDGRCAVRTLHLPDRFIDQASPAEMYADAGLTADDIAQAALEAMG 628
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS1_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymomonas mobilis GN=dxs1 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.432e-26 Identity = 61/142 (42.96%), Postives = 91/142 (64.08%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIM 428 GKGR++ G++VA+L GT ++ L A+ L++ GL +VAD RF KPLD AL R L KSH+V+IT+EEG++GGF + V+ + +GL+D +K R L LPDR+ Q A+AGL I A V + L + + +E++ Sbjct: 497 GKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRFQPQDKQERQYAEAGLDADGIVAAVISALHRNSKPVEVV 638
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CAUCR (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus GN=dxs PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.167e-26 Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401 GKGRI+ EG VA++ +GT + L A+ LL + GL TV DARF KPLD L+ LA+ HE +ITVEEGS+GGFG+ V+Q LA G LD +K R L LPD + D P AQAGL I + +G Sbjct: 495 GKGRIVREGTSVAIVSFGTRLSESLKAADLLAARGLSATVCDARFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CAUCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=dxs PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.167e-26 Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401 GKGRI+ EG VA++ +GT + L A+ LL + GL TV DARF KPLD L+ LA+ HE +ITVEEGS+GGFG+ V+Q LA G LD +K R L LPD + D P AQAGL I + +G Sbjct: 495 GKGRIVREGTSVAIVSFGTRLSESLKAADLLAARGLSATVCDARFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS2_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymomonas mobilis GN=dxs2 PE=3 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 5.442e-26 Identity = 61/142 (42.96%), Postives = 90/142 (63.38%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIM 428 GKGR++ G++VA+L GT ++ L A+ L++ GL +VAD RF KPLD AL R L KSH+V+IT+EEG++GGF + V+ + +GL+D +K R L LPDR+ Q A+AGL I A V L + + +E++ Sbjct: 497 GKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRFQPQDKQERQYAEAGLDADGIVAAVTAALQRNSKPVEVV 638
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PHEZH (1-deoxy-D-xylulose-5-phosphate synthase OS=Phenylobacterium zucineum (strain HLK1) GN=dxs PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 7.108e-26 Identity = 65/133 (48.87%), Postives = 80/133 (60.15%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401 G+GRI+ EG VA+L +GT + L A+ +L + GL TVADARF KPLD L+ LA+ HE LITVEEG++GGFG V+ LA G LD +K R L LPD + D P AQAGL I LG Sbjct: 495 GRGRIVREGTAVAILSFGTRLGESLKAADMLAARGLSATVADARFAKPLDVDLLLRLAREHEALITVEEGAVGGFGGFVLHALAEHGALDRGLKIRTLTLPDIFQDQDKPEAMYAQAGLDAEGIVRAALAALG 627
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SPHAL (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingopyxis alaskensis GN=dxs PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25 Identity = 63/140 (45.00%), Postives = 81/140 (57.86%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 422 GKGR++ EG+ VA+L GT + L A+ LE+ GL +V D RF KPLD LIR +HEV +TVEEGSIGG G+HV+ + +GL+D +K R L LPD + D P Q AGL I TV L +E Sbjct: 497 GKGRVVREGKTVAILSLGTRLAEALKAADTLEARGLSTSVIDLRFAKPLDEELIRRTLAAHEVCVTVEEGSIGGLGAHVLTLASDEGLIDAGLKLRTLRLPDMFQDQDKPELQYDAAGLNAPQIVDTVLKALRHNSAGVE 636
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_MAGSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetococcus sp. (strain MC-1) GN=dxs PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 8.133e-22 Identity = 58/134 (43.28%), Postives = 84/134 (62.69%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401 G+GR L +GE A+L G V L A+A+LE G+ ++V DARF KPLD L++ +A H V++ VEE ++ GGFGS V++ L+ G LD +K R + +PDRYI HG+ + + GL IA T+ +LG Sbjct: 490 GRGRTLRKGEHAAILAVGQPVHPALEAAAILEQQGISVSVYDARFVKPLDQRLLQEVA-MHGVVLVVEENAVQGGFGSAVLESLSNQGALDRGLKIRCMGIPDRYIPHGTQKELRGEIGLDAVGIATTLKELLG 622
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ALHEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dxs PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.387e-21 Identity = 60/120 (50.00%), Postives = 79/120 (65.83%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 359 GKG G R+A+L +GT V LA + L+ LTVAD RF +PLD ALIR LA +H++L+TVEE ++ GG GS V ++LA GL V R L LPDR++DHG+PA+ LA+ GL Sbjct: 496 GKGVCRRRGRRIAVLAFGTLVVPALAVAEALD-----LTVADMRFVRPLDEALIRELADTHDLLVTVEENAVAGGAGSGVSEYLARAGL---DVPVRHLGLPDRFVDHGTPAELLAEVGL 607 The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 386
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bpback to top |