CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CAUSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter sp. (strain K31) GN=dxs PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.886e-27
Identity = 67/133 (50.38%), Postives = 84/133 (63.16%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401
            GKGRI+ EG  VA++  GT +  CL A+ LL + GL  TVADARF KPLD  ++  LA+ HE +ITVEEG++GGFG+ V+Q LA  G LD  +K R LVLPD + D   P    AQAGL    I     + LG
Sbjct:  495 GKGRIVREGTSVAIVSLGTRLAECLKAADLLAARGLSATVADARFAKPLDVDMLLRLAREHEAIITVEEGAMGGFGAFVLQALATHGALDRGLKIRTLVLPDVFQDQDKPDLMYAQAGLDAEGILRGALSALG 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS2_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Jannaschia sp. (strain CCS1) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.886e-27
Identity = 64/133 (48.12%), Postives = 81/133 (60.90%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401
            GKGR++ +G  VA+L +G  ++    A+  LE+ GL +TVADARF KPLD  LI  L   H  LITVE+G++ GFG  V+  LA  G LDG    R L LPDR+ID  SPA+  A AGLT   IA      +G
Sbjct:  496 GKGRVIQDGHDVAILSFGAHLEEAKDAATALEARGLSVTVADARFAKPLDTTLIDDLMTKHSALITVEQGAVLGFGGLVLHHLAATGQLDGRCAVRTLHLPDRFIDQASPAEMYADAGLTADDIAQAALEAMG 628          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS1_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymomonas mobilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.432e-26
Identity = 61/142 (42.96%), Postives = 91/142 (64.08%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIM 428
            GKGR++  G++VA+L  GT ++  L A+  L++ GL  +VAD RF KPLD AL R L KSH+V+IT+EEG++GGF + V+   + +GL+D  +K R L LPDR+        Q A+AGL    I A V + L +  + +E++
Sbjct:  497 GKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRFQPQDKQERQYAEAGLDADGIVAAVISALHRNSKPVEVV 638          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CAUCR (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus GN=dxs PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.167e-26
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401
            GKGRI+ EG  VA++ +GT +   L A+ LL + GL  TV DARF KPLD  L+  LA+ HE +ITVEEGS+GGFG+ V+Q LA  G LD  +K R L LPD + D   P    AQAGL    I     + +G
Sbjct:  495 GKGRIVREGTSVAIVSFGTRLSESLKAADLLAARGLSATVCDARFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CAUCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=dxs PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.167e-26
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401
            GKGRI+ EG  VA++ +GT +   L A+ LL + GL  TV DARF KPLD  L+  LA+ HE +ITVEEGS+GGFG+ V+Q LA  G LD  +K R L LPD + D   P    AQAGL    I     + +G
Sbjct:  495 GKGRIVREGTSVAIVSFGTRLSESLKAADLLAARGLSATVCDARFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS2_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymomonas mobilis GN=dxs2 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.442e-26
Identity = 61/142 (42.96%), Postives = 90/142 (63.38%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIM 428
            GKGR++  G++VA+L  GT ++  L A+  L++ GL  +VAD RF KPLD AL R L KSH+V+IT+EEG++GGF + V+   + +GL+D  +K R L LPDR+        Q A+AGL    I A V   L +  + +E++
Sbjct:  497 GKGRLIRRGKKVAILSLGTRLEESLKAADRLDAQGLSTSVADMRFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRFQPQDKQERQYAEAGLDADGIVAAVTAALQRNSKPVEVV 638          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PHEZH (1-deoxy-D-xylulose-5-phosphate synthase OS=Phenylobacterium zucineum (strain HLK1) GN=dxs PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.108e-26
Identity = 65/133 (48.87%), Postives = 80/133 (60.15%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401
            G+GRI+ EG  VA+L +GT +   L A+ +L + GL  TVADARF KPLD  L+  LA+ HE LITVEEG++GGFG  V+  LA  G LD  +K R L LPD + D   P    AQAGL    I       LG
Sbjct:  495 GRGRIVREGTAVAILSFGTRLGESLKAADMLAARGLSATVADARFAKPLDVDLLLRLAREHEALITVEEGAVGGFGGFVLHALAEHGALDRGLKIRTLTLPDIFQDQDKPEAMYAQAGLDAEGIVRAALAALG 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SPHAL (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingopyxis alaskensis GN=dxs PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 63/140 (45.00%), Postives = 81/140 (57.86%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 422
            GKGR++ EG+ VA+L  GT +   L A+  LE+ GL  +V D RF KPLD  LIR    +HEV +TVEEGSIGG G+HV+   + +GL+D  +K R L LPD + D   P  Q   AGL    I  TV   L      +E
Sbjct:  497 GKGRVVREGKTVAILSLGTRLAEALKAADTLEARGLSTSVIDLRFAKPLDEELIRRTLAAHEVCVTVEEGSIGGLGAHVLTLASDEGLIDAGLKLRTLRLPDMFQDQDKPELQYDAAGLNAPQIVDTVLKALRHNSAGVE 636          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_MAGSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetococcus sp. (strain MC-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.133e-22
Identity = 58/134 (43.28%), Postives = 84/134 (62.69%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401
            G+GR L +GE  A+L  G  V   L A+A+LE  G+ ++V DARF KPLD  L++ +A  H V++ VEE ++ GGFGS V++ L+  G LD  +K R + +PDRYI HG+  +   + GL    IA T+  +LG
Sbjct:  490 GRGRTLRKGEHAAILAVGQPVHPALEAAAILEQQGISVSVYDARFVKPLDQRLLQEVA-MHGVVLVVEENAVQGGFGSAVLESLSNQGALDRGLKIRCMGIPDRYIPHGTQKELRGEIGLDAVGIATTLKELLG 622          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_ALHEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.387e-21
Identity = 60/120 (50.00%), Postives = 79/120 (65.83%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGL 359
            GKG     G R+A+L +GT V   LA +  L+     LTVAD RF +PLD ALIR LA +H++L+TVEE ++ GG GS V ++LA  GL    V  R L LPDR++DHG+PA+ LA+ GL
Sbjct:  496 GKGVCRRRGRRIAVLAFGTLVVPALAVAEALD-----LTVADMRFVRPLDEALIRELADTHDLLVTVEENAVAGGAGSGVSEYLARAGL---DVPVRHLGLPDRFVDHGTPAELLAEVGL 607          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_CAUSK2.886e-2750.381-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS2_JANSC2.886e-2748.121-deoxy-D-xylulose-5-phosphate synthase 2 OS=Janna... [more]
DXS1_ZYMMO1.432e-2642.961-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymom... [more]
DXS_CAUCR4.167e-2648.871-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_CAUCN4.167e-2648.871-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS2_ZYMMO5.442e-2642.961-deoxy-D-xylulose-5-phosphate synthase 2 OS=Zymom... [more]
DXS_PHEZH7.108e-2648.871-deoxy-D-xylulose-5-phosphate synthase OS=Phenylo... [more]
DXS_SPHAL1.584e-2545.001-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_MAGSM8.133e-2243.281-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_ALHEH1.387e-2150.001-deoxy-D-xylulose-5-phosphate synthase OS=Alkalil... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
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