CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CYAP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=dxs PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.417e-20
Identity = 58/138 (42.03%), Postives = 79/138 (57.25%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTRE 413
            GKG IL  G+ + LLGYGT V + +  + +L  HG+  TV +ARF KPLD  LI  LAK    ++T+EEG + GGFGS V + L    +L   V  +   +PD+ +DH  P +  A  GLT S IA  V     +T+E
Sbjct:  496 GKGEILRNGDDLLLLGYGTMVNTAMQVAEILGEHGIEATVVNARFVKPLDTDLIVPLAKQTGKVVTLEEGCLMGGFGSAVAEALLDHNVL---VPVKRFGVPDQLVDHAKPDESFADLGLTSSQIADEVLKSFFKTQE 630          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURCM (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dxs PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.463e-20
Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            EG+RVA+L +GT V   LAA   L++     TVA+ RF KP+D AL+R LA++H+ L+TVEEG + GG GS  V+ L   G++   ++   L LPD++IDHG PA  LAQ GL  + IA ++
Sbjct:  514 EGKRVAILAFGTMVAPSLAAGEELDA-----TVANMRFVKPIDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVIQ---LGLPDQFIDHGDPAKLLAQCGLDGAGIAKSI 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain MC40-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.828e-20
Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            EG+RVA+L +GT V   LAA   L++     TVA+ RF KP+D AL+R LA++H+ L+TVEEG + GG GS  V+ L   G++   ++   L LPD++IDHG PA  LAQ GL  + IA ++
Sbjct:  502 EGKRVAILAFGTMVAPSLAAGEELDA-----TVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVIQ---LGLPDQFIDHGDPAKLLAQCGLDGAGIAKSI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_TRIEI (1-deoxy-D-xylulose-5-phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=dxs PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.941e-20
Identity = 54/129 (41.86%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG IL  G+ V +LGYG+ V S +  + +L  HG+  TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V + L  + +L   ++   L +PD+ +DH  P +  A  GLTPS +A  +
Sbjct:  497 GKGEILRNGDDVLILGYGSMVYSAMQTAEILSEHGVAATVVNARFVKPLDTELILPLAQRIGQVVTMEEGCLMGGFGSAVTEALMDNNVLVPVLR---LGVPDKLVDHAKPDESKADLGLTPSQMAERI 622          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEA7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=dxs PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.298e-19
Identity = 58/129 (44.96%), Postives = 79/129 (61.24%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +   G +VALL +G  +     A A+  + GL  TVAD RF KPLD AL+R LA SHE+L+++EE ++ GG GS V +FLA +GL    V    L LPD Y++H  P++ LA+ GL  + I   V
Sbjct:  500 GKGVVRRRGGKVALLVFGVQL-----AEAMKVAEGLDATVADMRFVKPLDEALVRELAGSHELLVSIEENAVMGGAGSAVGEFLAREGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAV 620          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_LARHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.696e-19
Identity = 59/129 (45.74%), Postives = 81/129 (62.79%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            G+G +  +G+ +A+L +G+ V   LAA+  L++     +VAD RF KPLD ALIR LA SHE+L+TVEE  + GG GS V++ LA  G+   TV    L LPD Y++HG PA  LA  GL  + I  +V
Sbjct:  491 GQGTLRRQGKGIAILAFGSMVHPALAAADQLDA-----SVADMRFVKPLDTALIRQLAASHELLVTVEENVVMGGTGSAVLETLAAAGI---TVPVLNLGLPDHYVEHGDPALLLADCGLDTAGIVRSV 611          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CYAP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.696e-19
Identity = 55/138 (39.86%), Postives = 77/138 (55.80%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTRE 413
            GKG IL  G+ + +LGYGT V + L A+  L  HG+  TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V +  +   +L   V  +   +PDR +DH +P    A  GLT   IA  +  +    R+
Sbjct:  497 GKGEILRNGDDLLILGYGTMVNTALQAAETLREHGIEATVVNARFVKPLDTELILPLAQRIGKVVTLEEGCLMGGFGSAVAEAFSDHNVL---VPLKRFGVPDRLVDHATPDQSKADLGLTSPQIAEQILQVFFSNRQ 631          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEU5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas stutzeri (strain A1501) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLV---LPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GK  +   G +VALL +G  +   L     L++     TV D RF KPLD AL+R LA SHE+L+TVEE SI GG GS V +FLA +G+L      RP++   LPD Y++H  P++ LA+ GL  + I   V
Sbjct:  502 GKAVVRRRGSKVALLVFGVQLPEALQVGDALDA-----TVVDMRFVKPLDEALLRELAGSHELLVTVEENSIMGGAGSAVAEFLAAEGVL------RPILHLGLPDYYVEHAKPSEMLAECGLDAAGIEVAV 622          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_MICAN (1-deoxy-D-xylulose-5-phosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 55/129 (42.64%), Postives = 76/129 (58.91%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG IL  G+ + LLGYGT V + L  + +L  HG+  TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V++ L    +L   V  +   +PD+ +DH +P +  A  GLT   IA  V
Sbjct:  497 GKGEILRSGDDILLLGYGTMVNTSLQVAEILSEHGIEATVVNARFVKPLDTELIFPLAQRLGKVVTLEEGCLMGGFGSAVLEALQDANIL---VPVKRFGVPDKLVDHATPEESFADLGLTSPQIAQQV 622          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEAE (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa GN=dxs PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19
Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +   G RVALL +G  +     A A+  +  L  TV D RF KPLD AL+R LA SHE+L+T+EE ++ GG GS V +FLA +GL    V    L LPD Y++H  P++ LA+ GL  + I   V
Sbjct:  500 GKGVVRRRGGRVALLVFGVQL-----AEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAV 620          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_CYAP73.417e-2042.031-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_BURCM4.463e-2046.721-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURA45.828e-2046.721-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_TRIEI9.941e-2041.861-deoxy-D-xylulose-5-phosphate synthase OS=Trichod... [more]
DXS_PSEA71.298e-1944.961-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_LARHH1.696e-1945.741-deoxy-D-xylulose-5-phosphate synthase OS=Laribac... [more]
DXS_CYAP81.696e-1939.861-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_PSEU52.215e-1943.941-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_MICAN2.215e-1942.641-deoxy-D-xylulose-5-phosphate synthase OS=Microcy... [more]
DXS_PSEAE2.893e-1944.961-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
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