CF417125
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CYAP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=dxs PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.417e-20 Identity = 58/138 (42.03%), Postives = 79/138 (57.25%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTRE 413 GKG IL G+ + LLGYGT V + + + +L HG+ TV +ARF KPLD LI LAK ++T+EEG + GGFGS V + L +L V + +PD+ +DH P + A GLT S IA V +T+E Sbjct: 496 GKGEILRNGDDLLLLGYGTMVNTAMQVAEILGEHGIEATVVNARFVKPLDTDLIVPLAKQTGKVVTLEEGCLMGGFGSAVAEALLDHNVL---VPVKRFGVPDQLVDHAKPDESFADLGLTSSQIADEVLKSFFKTQE 630
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURCM (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dxs PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.463e-20 Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 3 Query: 24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 EG+RVA+L +GT V LAA L++ TVA+ RF KP+D AL+R LA++H+ L+TVEEG + GG GS V+ L G++ ++ L LPD++IDHG PA LAQ GL + IA ++ Sbjct: 514 EGKRVAILAFGTMVAPSLAAGEELDA-----TVANMRFVKPIDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVIQ---LGLPDQFIDHGDPAKLLAQCGLDGAGIAKSI 627
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain MC40-6) GN=dxs PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 5.828e-20 Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 3 Query: 24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 EG+RVA+L +GT V LAA L++ TVA+ RF KP+D AL+R LA++H+ L+TVEEG + GG GS V+ L G++ ++ L LPD++IDHG PA LAQ GL + IA ++ Sbjct: 502 EGKRVAILAFGTMVAPSLAAGEELDA-----TVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVIQ---LGLPDQFIDHGDPAKLLAQCGLDGAGIAKSI 615
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_TRIEI (1-deoxy-D-xylulose-5-phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=dxs PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 9.941e-20 Identity = 54/129 (41.86%), Postives = 78/129 (60.47%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG IL G+ V +LGYG+ V S + + +L HG+ TV +ARF KPLD LI LA+ ++T+EEG + GGFGS V + L + +L ++ L +PD+ +DH P + A GLTPS +A + Sbjct: 497 GKGEILRNGDDVLILGYGSMVYSAMQTAEILSEHGVAATVVNARFVKPLDTELILPLAQRIGQVVTMEEGCLMGGFGSAVTEALMDNNVLVPVLR---LGVPDKLVDHAKPDESKADLGLTPSQMAERI 622
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEA7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=dxs PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.298e-19 Identity = 58/129 (44.96%), Postives = 79/129 (61.24%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + G +VALL +G + A A+ + GL TVAD RF KPLD AL+R LA SHE+L+++EE ++ GG GS V +FLA +GL V L LPD Y++H P++ LA+ GL + I V Sbjct: 500 GKGVVRRRGGKVALLVFGVQL-----AEAMKVAEGLDATVADMRFVKPLDEALVRELAGSHELLVSIEENAVMGGAGSAVGEFLAREGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAV 620
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_LARHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dxs PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.696e-19 Identity = 59/129 (45.74%), Postives = 81/129 (62.79%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 G+G + +G+ +A+L +G+ V LAA+ L++ +VAD RF KPLD ALIR LA SHE+L+TVEE + GG GS V++ LA G+ TV L LPD Y++HG PA LA GL + I +V Sbjct: 491 GQGTLRRQGKGIAILAFGSMVHPALAAADQLDA-----SVADMRFVKPLDTALIRQLAASHELLVTVEENVVMGGTGSAVLETLAAAGI---TVPVLNLGLPDHYVEHGDPALLLADCGLDTAGIVRSV 611
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CYAP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=dxs PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.696e-19 Identity = 55/138 (39.86%), Postives = 77/138 (55.80%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTRE 413 GKG IL G+ + +LGYGT V + L A+ L HG+ TV +ARF KPLD LI LA+ ++T+EEG + GGFGS V + + +L V + +PDR +DH +P A GLT IA + + R+ Sbjct: 497 GKGEILRNGDDLLILGYGTMVNTALQAAETLREHGIEATVVNARFVKPLDTELILPLAQRIGKVVTLEEGCLMGGFGSAVAEAFSDHNVL---VPLKRFGVPDRLVDHATPDQSKADLGLTSPQIAEQILQVFFSNRQ 631
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEU5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas stutzeri (strain A1501) GN=dxs PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19 Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLV---LPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GK + G +VALL +G + L L++ TV D RF KPLD AL+R LA SHE+L+TVEE SI GG GS V +FLA +G+L RP++ LPD Y++H P++ LA+ GL + I V Sbjct: 502 GKAVVRRRGSKVALLVFGVQLPEALQVGDALDA-----TVVDMRFVKPLDEALLRELAGSHELLVTVEENSIMGGAGSAVAEFLAAEGVL------RPILHLGLPDYYVEHAKPSEMLAECGLDAAGIEVAV 622
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_MICAN (1-deoxy-D-xylulose-5-phosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=dxs PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19 Identity = 55/129 (42.64%), Postives = 76/129 (58.91%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG IL G+ + LLGYGT V + L + +L HG+ TV +ARF KPLD LI LA+ ++T+EEG + GGFGS V++ L +L V + +PD+ +DH +P + A GLT IA V Sbjct: 497 GKGEILRSGDDILLLGYGTMVNTSLQVAEILSEHGIEATVVNARFVKPLDTELIFPLAQRLGKVVTLEEGCLMGGFGSAVLEALQDANIL---VPVKRFGVPDKLVDHATPEESFADLGLTSPQIAQQV 622
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEAE (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa GN=dxs PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19 Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + G RVALL +G + A A+ + L TV D RF KPLD AL+R LA SHE+L+T+EE ++ GG GS V +FLA +GL V L LPD Y++H P++ LA+ GL + I V Sbjct: 500 GKGVVRRRGGRVALLVFGVQL-----AEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAV 620 The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 386
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bpback to top |