CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7251 contig Csv1_Contig7251:1281..1888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19
Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +   G RVALL +G  +     A A+  +  L  TV D RF KPLD AL+R LA SHE+L+T+EE ++ GG GS V +FLA +GL    V    L LPD Y++H  P++ LA+ GL  + I   V
Sbjct:  500 GKGVVRRRGGRVALLVFGVQL-----AEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAV 620          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEA8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19
Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +   G RVALL +G  +     A A+  +  L  TV D RF KPLD AL+R LA SHE+L+T+EE ++ GG GS V +FLA +GL    V    L LPD Y++H  P++ LA+ GL  + I   V
Sbjct:  500 GKGVVRRRGGRVALLVFGVQL-----AEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAV 620          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS2_GEOMG (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19
Identity = 54/129 (41.86%), Postives = 80/129 (62.02%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            G+G +L EG+ VA++  G+ V     A+ LLE+ G+R TV +ARF KPLD  LI   A+    ++TVEE ++ GGFGS V++ LA +G+ D  V+ + + +PDR+I+ G         GL  + IAATV
Sbjct:  493 GRGELLTEGDDVAIVAIGSTVYPAQEAAKLLEARGIRATVVNARFVKPLDRELILGAARRTGCIVTVEENALQGGFGSAVLELLADEGMTD--VRAKRIGIPDRFIEQGPQPQLRKDLGLDGAGIAATV 619          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEPF (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19
Identity = 57/144 (39.58%), Postives = 83/144 (57.64%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMS 431
            GKG +  +G +VALL +G  +   L  +  L++     TV D RF KP+D AL+R +A SH++L+T+EE +I GG G  V +FLA + +L   +    L LPD Y++H  PA  LA+ GL    I A V       RE LE+++
Sbjct:  503 GKGVVRRQGSKVALLVFGVQMAEALKVAETLDA-----TVVDMRFVKPMDEALVREIANSHDLLVTIEENAIMGGAGGAVSEFLARENILKSVLH---LGLPDVYVEHAKPAQMLAECGLDEVGIEAAV-------RERLELLN 631          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEF5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19
Identity = 57/129 (44.19%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG I  +G +VALL +G  +     A AL  +  L  TV D RF KPLD AL+R +A SHE+L+T+EE +I GG G  V ++LA + +L   +    L LPD Y++H  PA  LA+ GL  + I A+V
Sbjct:  503 GKGVIRRQGRQVALLVFGVQL-----AEALQVAEKLDATVVDMRFVKPLDEALVREIASSHELLVTIEENAIMGGAGGAVSEYLARENILKPILH---LGLPDAYVEHAKPAQMLAECGLDEAGIEASV 623          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia sp. (strain 383) GN=dxs PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19
Identity = 56/122 (45.90%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            EG+RVA+L +GT V   LAA+  L++     TVA+ RF KP+D AL+R LA++H+ L+TVEEG + GG GS  V+ L   G++   ++   L LPD +IDHG PA  L+Q GL  + IA ++
Sbjct:  502 EGKRVAILAFGTMVAPSLAAAEELDA-----TVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVLQ---LGLPDLFIDHGDPAKLLSQCGLDGAGIAKSI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BREBN (1-deoxy-D-xylulose-5-phosphate synthase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19
Identity = 55/141 (39.01%), Postives = 85/141 (60.28%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 422
            GK  I+ EG+ VA+L +G   +   AA   L+  G++  + +ARFCKPLD  L+  LAK    +ITVEEGS +GGFGS V++  +  G     V  + + +PD +++HGS  +Q  + GLT  HIAA V +++  ++  +E
Sbjct:  489 GKAEIVREGKHVAILSFGHVFEIAEAAVNQLQEEGIKPMLVNARFCKPLDEELLFRLAKEGYDIITVEEGSEMGGFGSAVIECYSRAGYHGMNV--QIVAVPDYFVEHGSVKEQRQEVGLTADHIAARVRSLMPISKGVVE 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BORPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella parapertussis GN=dxs PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19
Identity = 58/129 (44.96%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +  EG R+A+LG+GT VQ+ L A+  +++     TVAD RF KPLD  L+  LA  H+ L+TVEE +I GG GS V++ LA  G+   T+    L LPD +IDHG  A  LA  GL  + I   +
Sbjct:  491 GKGLVRREGRRIAILGFGTLVQAALGAAGQIDA-----TVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGSAVLETLAEAGV---TLPVLQLGLPDAFIDHGDQAALLAGLGLDAAGIERAI 611          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BORBR (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella bronchiseptica GN=dxs PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19
Identity = 58/129 (44.96%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +  EG R+A+LG+GT VQ+ L A+  +++     TVAD RF KPLD  L+  LA  H+ L+TVEE +I GG GS V++ LA  G+   T+    L LPD +IDHG  A  LA  GL  + I   +
Sbjct:  491 GKGLVRREGRRIAILGFGTLVQAALGAAGQIDA-----TVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGSAVLETLAEAGV---TLPVLQLGLPDAFIDHGDQAALLAGLGLDAAGIERAI 611          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PROM4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.934e-19
Identity = 52/134 (38.81%), Postives = 80/134 (59.70%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401
            G+G IL +G+ + +L YG+ V   +  + LL+  G+  TV +ARF +PLD ALI  LA+    ++T+EEG++ GGFGS VV+  +   LL  T +   L +PD+ +DH SP       GLTPS ++ ++    G
Sbjct:  496 GRGEILEDGDDLLILAYGSMVTPAVQTAELLKQAGISSTVVNARFLRPLDQALIHPLARRIGKVVTIEEGALGGGFGSAVVESFSDQDLLVPTFR---LGIPDKLVDHASPQQSKESLGLTPSQMSKSIMKRYG 626          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_PSEAB2.893e-1944.961-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEA82.893e-1944.961-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS2_GEOMG2.893e-1941.861-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geoba... [more]
DXS_PSEPF3.778e-1939.581-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEF53.778e-1944.191-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_BURS33.778e-1945.901-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BREBN3.778e-1939.011-deoxy-D-xylulose-5-phosphate synthase OS=Breviba... [more]
DXS_BORPA3.778e-1944.961-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_BORBR3.778e-1944.961-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_PROM44.934e-1938.811-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
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