CF417125
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dxs PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19 Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + G RVALL +G + A A+ + L TV D RF KPLD AL+R LA SHE+L+T+EE ++ GG GS V +FLA +GL V L LPD Y++H P++ LA+ GL + I V Sbjct: 500 GKGVVRRRGGRVALLVFGVQL-----AEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAV 620
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEA8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=dxs PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19 Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + G RVALL +G + A A+ + L TV D RF KPLD AL+R LA SHE+L+T+EE ++ GG GS V +FLA +GL V L LPD Y++H P++ LA+ GL + I V Sbjct: 500 GKGVVRRRGGRVALLVFGVQL-----AEAMKVAESLDATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAV 620
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS2_GEOMG (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxs2 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19 Identity = 54/129 (41.86%), Postives = 80/129 (62.02%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 G+G +L EG+ VA++ G+ V A+ LLE+ G+R TV +ARF KPLD LI A+ ++TVEE ++ GGFGS V++ LA +G+ D V+ + + +PDR+I+ G GL + IAATV Sbjct: 493 GRGELLTEGDDVAIVAIGSTVYPAQEAAKLLEARGIRATVVNARFVKPLDRELILGAARRTGCIVTVEENALQGGFGSAVLELLADEGMTD--VRAKRIGIPDRFIEQGPQPQLRKDLGLDGAGIAATV 619
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEPF (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dxs PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19 Identity = 57/144 (39.58%), Postives = 83/144 (57.64%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMS 431 GKG + +G +VALL +G + L + L++ TV D RF KP+D AL+R +A SH++L+T+EE +I GG G V +FLA + +L + L LPD Y++H PA LA+ GL I A V RE LE+++ Sbjct: 503 GKGVVRRQGSKVALLVFGVQMAEALKVAETLDA-----TVVDMRFVKPMDEALVREIANSHDLLVTIEENAIMGGAGGAVSEFLARENILKSVLH---LGLPDVYVEHAKPAQMLAECGLDEVGIEAAV-------RERLELLN 631
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEF5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dxs PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19 Identity = 57/129 (44.19%), Postives = 78/129 (60.47%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG I +G +VALL +G + A AL + L TV D RF KPLD AL+R +A SHE+L+T+EE +I GG G V ++LA + +L + L LPD Y++H PA LA+ GL + I A+V Sbjct: 503 GKGVIRRQGRQVALLVFGVQL-----AEALQVAEKLDATVVDMRFVKPLDEALVREIASSHELLVTIEENAIMGGAGGAVSEYLARENILKPILH---LGLPDAYVEHAKPAQMLAECGLDEAGIEASV 623
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia sp. (strain 383) GN=dxs PE=3 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19 Identity = 56/122 (45.90%), Postives = 80/122 (65.57%), Query Frame = 3 Query: 24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 EG+RVA+L +GT V LAA+ L++ TVA+ RF KP+D AL+R LA++H+ L+TVEEG + GG GS V+ L G++ ++ L LPD +IDHG PA L+Q GL + IA ++ Sbjct: 502 EGKRVAILAFGTMVAPSLAAAEELDA-----TVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVLQ---LGLPDLFIDHGDPAKLLSQCGLDGAGIAKSI 615
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BREBN (1-deoxy-D-xylulose-5-phosphate synthase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dxs PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19 Identity = 55/141 (39.01%), Postives = 85/141 (60.28%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALE 422 GK I+ EG+ VA+L +G + AA L+ G++ + +ARFCKPLD L+ LAK +ITVEEGS +GGFGS V++ + G V + + +PD +++HGS +Q + GLT HIAA V +++ ++ +E Sbjct: 489 GKAEIVREGKHVAILSFGHVFEIAEAAVNQLQEEGIKPMLVNARFCKPLDEELLFRLAKEGYDIITVEEGSEMGGFGSAVIECYSRAGYHGMNV--QIVAVPDYFVEHGSVKEQRQEVGLTADHIAARVRSLMPISKGVVE 627
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BORPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella parapertussis GN=dxs PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19 Identity = 58/129 (44.96%), Postives = 78/129 (60.47%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + EG R+A+LG+GT VQ+ L A+ +++ TVAD RF KPLD L+ LA H+ L+TVEE +I GG GS V++ LA G+ T+ L LPD +IDHG A LA GL + I + Sbjct: 491 GKGLVRREGRRIAILGFGTLVQAALGAAGQIDA-----TVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGSAVLETLAEAGV---TLPVLQLGLPDAFIDHGDQAALLAGLGLDAAGIERAI 611
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BORBR (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella bronchiseptica GN=dxs PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19 Identity = 58/129 (44.96%), Postives = 78/129 (60.47%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + EG R+A+LG+GT VQ+ L A+ +++ TVAD RF KPLD L+ LA H+ L+TVEE +I GG GS V++ LA G+ T+ L LPD +IDHG A LA GL + I + Sbjct: 491 GKGLVRREGRRIAILGFGTLVQAALGAAGQIDA-----TVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGSAVLETLAEAGV---TLPVLQLGLPDAFIDHGDQAALLAGLGLDAAGIERAI 611
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PROM4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=dxs PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 4.934e-19 Identity = 52/134 (38.81%), Postives = 80/134 (59.70%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILG 401 G+G IL +G+ + +L YG+ V + + LL+ G+ TV +ARF +PLD ALI LA+ ++T+EEG++ GGFGS VV+ + LL T + L +PD+ +DH SP GLTPS ++ ++ G Sbjct: 496 GRGEILEDGDDLLILAYGSMVTPAVQTAELLKQAGISSTVVNARFLRPLDQALIHPLARRIGKVVTIEEGALGGGFGSAVVESFSDQDLLVPTFR---LGIPDKLVDHASPQQSKESLGLTPSQMSKSIMKRYG 626 The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 386
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bpback to top |