CF417125
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=dxs PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 4.934e-19 Identity = 56/134 (41.79%), Postives = 84/134 (62.69%), Query Frame = 3 Query: 3 GKGRILIE-----GERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + + G+R+A+L +GT V LAA+ L++ TVA+ RF KP+D AL+R LA++H+ ++TVEEG + GG GS V+ + G++ ++ L LPDR+IDHG PA LA GL + IA ++ Sbjct: 490 GKGEVRRQSTQPAGKRIAILAFGTMVAPSLAAAEQLDA-----TVANMRFVKPIDAALVRELAETHDAVVTVEEGCVMGGAGSACVEAMMESGVIRPVLQ---LGLPDRFIDHGDPAKLLASCGLDAAGIAKSI 615
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SYNY3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=dxs PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.444e-19 Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 407 GK IL G+ V LLGYG+ V L + LL HG+ TV +ARF KPLD LI LA+ ++T+EEG + GGFGS V + L + +L V + L +PD +DH +P GLTP+ +A + L +T Sbjct: 497 GKAEILRSGDDVLLLGYGSMVYPALQTAELLHEHGIEATVVNARFVKPLDTELILPLAERIGKVVTMEEGCLMGGFGSAVAEALMDNNVL---VPLKRLGVPDILVDHATPEQSTVDLGLTPAQMAQNIMASLFKT 629
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURCJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=dxs PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 8.416e-19 Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = 3 Query: 24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 EG+RVA+L +GT V LAA+ L++ TVA+ RF KP+D AL+R LA++H+ ++TVEEG + GG GS V+ L G++ ++ L LPD +IDHG PA L+Q GL + IA ++ Sbjct: 502 EGKRVAILAFGTMVAPSLAAAEELDA-----TVANMRFVKPVDAALVRELAETHDYVVTVEEGCVMGGAGSACVEALMESGVIRPVLQ---LGLPDLFIDHGDPAKLLSQCGLDGAGIAKSI 615
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SHEAM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dxs PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18 Identity = 54/129 (41.86%), Postives = 80/129 (62.02%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + +G+++A+L +GT + A+AL + L TVAD RF KPLD AL+ LA SH+VL+TVEE +I GG GS V++FLA L ++ + +PD +I HG P + L++ GL + I + Sbjct: 496 GKGVMRRQGQKIAILNFGTTL-----AAALTAAESLNATVADMRFVKPLDEALLLELAASHDVLVTVEENAIMGGAGSGVLEFLASKNRLKPLLQ---IGIPDEFIKHGGPEEILSELGLDAAGIEGQI 616
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CYAA5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=dxs PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18 Identity = 57/136 (41.91%), Postives = 77/136 (56.62%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 407 GKG IL G+ V L+GYGT V L + +L+ HG+ TV +ARF KPLD LI LA+ ++T+EEG + GGFGS V + L LD D V + +PD+ +DH P + A GLT IA + + T Sbjct: 497 GKGEILRNGDDVLLVGYGTMVHQSLQVAEILKEHGIEATVVNARFVKPLDTELIVPLAQRIGKVVTLEEGCLMGGFGSAVAEAL-LDH--DVVVPIKRFGVPDKLVDHAKPDESKADLGLTSPQIAEEIRQLFFNT 629
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain HI2424) GN=dxs PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18 Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = 3 Query: 24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 EG+RVA+L +GT V LAA+ L++ TVA+ RF KP+D AL+R LA++H+ L+TVEEG + GG GS V+ L G++ ++ L LPD+++DHG A LAQ GL + IA ++ Sbjct: 514 EGKRVAILAFGTMVAPSLAAAEELDA-----TVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVLQ---LGLPDQFVDHGDHAKLLAQCGLDGAGIAKSI 627
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURCC (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain MC0-3) GN=dxs PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18 Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = 3 Query: 24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 EG+RVA+L +GT V LAA+ L++ TVA+ RF KP+D AL+R LA++H+ L+TVEEG + GG GS V+ L G++ ++ L LPD+++DHG A LAQ GL + IA ++ Sbjct: 502 EGKRVAILAFGTMVAPSLAAAEELDA-----TVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVLQ---LGLPDQFVDHGDHAKLLAQCGLDGAGIAKSI 615
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain AU 1054) GN=dxs PE=3 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18 Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = 3 Query: 24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 EG+RVA+L +GT V LAA+ L++ TVA+ RF KP+D AL+R LA++H+ L+TVEEG + GG GS V+ L G++ ++ L LPD+++DHG A LAQ GL + IA ++ Sbjct: 502 EGKRVAILAFGTMVAPSLAAAEELDA-----TVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVLQ---LGLPDQFVDHGDHAKLLAQCGLDGAGIAKSI 615
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEPK (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain KT2440) GN=dxs PE=3 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 1.875e-18 Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + +GE+VALL +G + A A+ + + TV D RF KPLD AL+ LA SHE+L+T+EE +I GG G+ V +FLA +L + L LPD Y++H PA LA+ GL + I A+V Sbjct: 502 GKGVVRRQGEKVALLVFGVQL-----AEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVLKPLLH---LGLPDIYVEHAKPAQMLAECGLDAAGIEASV 622
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dxs PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.875e-18 Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 3 Query: 3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386 GKG + +GE+VALL +G + A A+ + + TV D RF KPLD AL+ LA SHE+L+T+EE +I GG G+ V +FLA +L + L LPD Y++H PA LA+ GL + I A+V Sbjct: 502 GKGVVRRQGEKVALLVFGVQL-----AEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVLKPLLH---LGLPDIYVEHAKPAQMLAECGLDAAGIEASV 622 The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 386
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bpback to top |