CF417125

Overview
NameCF417125
Unique NameCF417125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7251 contig Csv1_Contig7251:1281..1888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.934e-19
Identity = 56/134 (41.79%), Postives = 84/134 (62.69%), Query Frame = 3
Query:    3 GKGRILIE-----GERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +  +     G+R+A+L +GT V   LAA+  L++     TVA+ RF KP+D AL+R LA++H+ ++TVEEG + GG GS  V+ +   G++   ++   L LPDR+IDHG PA  LA  GL  + IA ++
Sbjct:  490 GKGEVRRQSTQPAGKRIAILAFGTMVAPSLAAAEQLDA-----TVANMRFVKPIDAALVRELAETHDAVVTVEEGCVMGGAGSACVEAMMESGVIRPVLQ---LGLPDRFIDHGDPAKLLASCGLDAAGIAKSI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SYNY3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.444e-19
Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 407
            GK  IL  G+ V LLGYG+ V   L  + LL  HG+  TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V + L  + +L   V  + L +PD  +DH +P       GLTP+ +A  +   L +T
Sbjct:  497 GKAEILRSGDDVLLLGYGSMVYPALQTAELLHEHGIEATVVNARFVKPLDTELILPLAERIGKVVTMEEGCLMGGFGSAVAEALMDNNVL---VPLKRLGVPDILVDHATPEQSTVDLGLTPAQMAQNIMASLFKT 629          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURCJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.416e-19
Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            EG+RVA+L +GT V   LAA+  L++     TVA+ RF KP+D AL+R LA++H+ ++TVEEG + GG GS  V+ L   G++   ++   L LPD +IDHG PA  L+Q GL  + IA ++
Sbjct:  502 EGKRVAILAFGTMVAPSLAAAEELDA-----TVANMRFVKPVDAALVRELAETHDYVVTVEEGCVMGGAGSACVEALMESGVIRPVLQ---LGLPDLFIDHGDPAKLLSQCGLDGAGIAKSI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_SHEAM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18
Identity = 54/129 (41.86%), Postives = 80/129 (62.02%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +  +G+++A+L +GT +     A+AL  +  L  TVAD RF KPLD AL+  LA SH+VL+TVEE +I GG GS V++FLA    L   ++   + +PD +I HG P + L++ GL  + I   +
Sbjct:  496 GKGVMRRQGQKIAILNFGTTL-----AAALTAAESLNATVADMRFVKPLDEALLLELAASHDVLVTVEENAIMGGAGSGVLEFLASKNRLKPLLQ---IGIPDEFIKHGGPEEILSELGLDAAGIEGQI 616          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_CYAA5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18
Identity = 57/136 (41.91%), Postives = 77/136 (56.62%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQT 407
            GKG IL  G+ V L+GYGT V   L  + +L+ HG+  TV +ARF KPLD  LI  LA+    ++T+EEG + GGFGS V + L LD   D  V  +   +PD+ +DH  P +  A  GLT   IA  +  +   T
Sbjct:  497 GKGEILRNGDDVLLVGYGTMVHQSLQVAEILKEHGIEATVVNARFVKPLDTELIVPLAQRIGKVVTLEEGCLMGGFGSAVAEAL-LDH--DVVVPIKRFGVPDKLVDHAKPDESKADLGLTSPQIAEEIRQLFFNT 629          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain HI2424) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18
Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            EG+RVA+L +GT V   LAA+  L++     TVA+ RF KP+D AL+R LA++H+ L+TVEEG + GG GS  V+ L   G++   ++   L LPD+++DHG  A  LAQ GL  + IA ++
Sbjct:  514 EGKRVAILAFGTMVAPSLAAAEELDA-----TVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVLQ---LGLPDQFVDHGDHAKLLAQCGLDGAGIAKSI 627          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURCC (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain MC0-3) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18
Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            EG+RVA+L +GT V   LAA+  L++     TVA+ RF KP+D AL+R LA++H+ L+TVEEG + GG GS  V+ L   G++   ++   L LPD+++DHG  A  LAQ GL  + IA ++
Sbjct:  502 EGKRVAILAFGTMVAPSLAAAEELDA-----TVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVLQ---LGLPDQFVDHGDHAKLLAQCGLDGAGIAKSI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_BURCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain AU 1054) GN=dxs PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18
Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   24 EGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            EG+RVA+L +GT V   LAA+  L++     TVA+ RF KP+D AL+R LA++H+ L+TVEEG + GG GS  V+ L   G++   ++   L LPD+++DHG  A  LAQ GL  + IA ++
Sbjct:  502 EGKRVAILAFGTMVAPSLAAAEELDA-----TVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGSACVEALMESGVIRPVLQ---LGLPDQFVDHGDHAKLLAQCGLDGAGIAKSI 615          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEPK (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain KT2440) GN=dxs PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.875e-18
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +  +GE+VALL +G  +     A A+  +  +  TV D RF KPLD AL+  LA SHE+L+T+EE +I GG G+ V +FLA   +L   +    L LPD Y++H  PA  LA+ GL  + I A+V
Sbjct:  502 GKGVVRRQGEKVALLVFGVQL-----AEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVLKPLLH---LGLPDIYVEHAKPAQMLAECGLDAAGIEASV 622          
BLAST of CF417125 vs. ExPASy Swiss-Prot
Match: DXS_PSEP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.875e-18
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 GKGRILIEGERVALLGYGTAVQSCLAASALLESHGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATV 386
            GKG +  +GE+VALL +G  +     A A+  +  +  TV D RF KPLD AL+  LA SHE+L+T+EE +I GG G+ V +FLA   +L   +    L LPD Y++H  PA  LA+ GL  + I A+V
Sbjct:  502 GKGVVRRQGEKVALLVFGVQL-----AEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVLKPLLH---LGLPDIYVEHAKPAQMLAECGLDAAGIEASV 622          
The following BLAST results are available for this feature:
BLAST of CF417125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
DXS_BURP84.934e-1941.791-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_SYNY36.444e-1941.181-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_BURCJ8.416e-1945.081-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_SHEAM1.099e-1841.861-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_CYAA51.099e-1841.911-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_BURCH1.099e-1845.081-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCC1.099e-1845.081-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCA1.099e-1845.081-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_PSEPK1.875e-1843.411-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEP11.875e-1843.411-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-055 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417125 ID=CF417125; Name=CF417125; organism=Citrus sinensis; type=EST; length=608bp
TTGGCAAAGGCAGGATACTGATTGAAGGTGAAAGAGTCGCACTCTTGGGC
TATGGTACAGCCGTTCAGAGCTGTTTAGCTGCTTCTGCTTTATTGGAATC
CCATGGGTTACGGCTGACTGTAGCTGATGCTCGATTCTGTAAACCACTGG
ATCATGCCCTCATTCGTAGCTTGGCAAAATCACATGAAGTTTTGATTACT
GTGGAGGAAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCT
CGCTCTCGATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTAC
TCCCCGATCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAA
GCTGGTCTTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGG
ACAGACAAGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATAC
ACAATTATTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGA
AGTTATATACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCAT
TGGNTTATTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCA
ACTTGATT
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