CF417130
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 5.285e-46 Identity = 107/183 (58.47%), Postives = 121/183 (66.12%), Query Frame = 3 Query: 6 MATSTMALSSSFVGKAVNLAPSGNELSNG-----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW---WTTVGTLLGFQLTQKPLPRTVELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLDGSR 518 MATST AL+S+F G+ + NELS R+ M SK+ SGS WYG DR YLGPFSG PPSYL P W T G + + ELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWA L G ++G R Sbjct: 1 MATSTAALTSTFSGQQLKPV---NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAG----LSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR 175 HSP 2 Score: 102.834 bits (255), Expect = 1.564e-21 Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 1 Query: 493 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 CQV+LMGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLADDPEAFAELKVK+ Sbjct: 163 CQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKE 213
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 182.57 bits (462), Expect = 1.538e-45 Identity = 106/186 (56.99%), Postives = 123/186 (66.13%), Query Frame = 3 Query: 6 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW---WTTVGTLLGFQLTQKPLPRTVELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLDGSR*G 524 MATS + S+F G+ NEL GGR+SMR+T + +S WYGPDR KYLGPFS + PSYL P W T G + + ELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA L G ++G R G Sbjct: 1 MATSAIQ-QSAFAGQTA--LKQSNELVCKIGAVGGGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAG----LSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVG 177 HSP 2 Score: 94.3597 bits (233), Expect = 5.561e-19 Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 1 Query: 493 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 CQVVLMG VEGYR+ GGPLGE DP+YPGG+FDPLGLADDP+AFAELKVK+ Sbjct: 163 CQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKE 213
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 2.008e-45 Identity = 103/179 (57.54%), Postives = 119/179 (66.48%), Query Frame = 3 Query: 6 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW---WTTVGTLLGFQLTQKPLPRTVELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLDG 512 MA +TMA++S + VGK A ++ GRI+MRKT +K SGSPWYG DRV YLGP SG PPSYL P W T G + + ELEVIHCRWA+ LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+HAQSILAIWA L G ++G Sbjct: 1 MAAATMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEG----LSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEG 172 HSP 2 Score: 91.6633 bits (226), Expect = 3.605e-18 Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 1 Query: 493 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 CQVVLMGAVEGY +AGG LGEV DPLY GGSFDPLGL DDPE FAELKVK+ Sbjct: 162 CQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKE 212
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 2.623e-45 Identity = 106/186 (56.99%), Postives = 124/186 (66.67%), Query Frame = 3 Query: 6 MATSTMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW---WTTVGTLLGFQLTQKP--LPRTVELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLDGSR 518 MA +T S++ G++ L NELS R++MR+T SKS S + WYG DR K+LGPFSGE PSYL+ W T G L+ P R ELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWA L G ++G R Sbjct: 1 MAAATAMHSTALAGQS--LVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAG------LSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 178 HSP 2 Score: 102.834 bits (255), Expect = 1.564e-21 Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 1 Query: 493 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 CQVVLMGAVEGYR+AGGPLGEVTDP+YPGGSFDPLGLADDP+ FAELKVK+ Sbjct: 166 CQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKE 216
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 2.623e-45 Identity = 95/142 (66.90%), Postives = 103/142 (72.54%), Query Frame = 3 Query: 114 TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW---WTTVGTLLGFQLTQKPLPRTVELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLDGSR 518 T K SS SPW+GPD VKYLGPFSGE PSYL P W T G + + ELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA L G ++G R Sbjct: 1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAG----LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 138 HSP 2 Score: 95.9005 bits (237), Expect = 1.911e-19 Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 Query: 496 QVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+ PEAFAELKVK+ Sbjct: 127 QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKE 176
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 5.843e-45 Identity = 106/186 (56.99%), Postives = 122/186 (65.59%), Query Frame = 3 Query: 6 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW---WTTVGTLLGFQLTQKPLPRTVELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLDGSR*G 524 MATS + S+F G+ S NEL NGGR +MR+T + S WYG DR KYLGPFS + PSYL P W T G + R ELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILA+WA L G ++G R G Sbjct: 1 MATSAIE-QSAFAGQTA--LKSQNELVRKIGSFNGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAG----LSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVG 177 HSP 2 Score: 90.1225 bits (222), Expect = 1.049e-17 Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 1 Query: 463 TLRASWPSGLCQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 ++ A W S QVVLMG +EGYR+ GGPLGE D +YPGG+FDPLGLADDPEAFAELKVK+ Sbjct: 156 SILAVWAS---QVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 7.632e-45 Identity = 106/185 (57.30%), Postives = 121/185 (65.41%), Query Frame = 3 Query: 6 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW---WTTVGTLLGFQLTQKPLPRTVELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLDGSR*G 524 MAT++ SSS G+ + L P NEL + RI+MR+T + S WYGPDR KYLGPFS PSYL P W T + + ELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSILAIWA L G ++G R G Sbjct: 1 MATASAIQSSSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAV----SADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVG 178 HSP 2 Score: 87.0409 bits (214), Expect = 8.879e-17 Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1 Query: 493 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 CQVVLMG +EGYR+ GG LGE DPL PGG+FDPLGLADDPEA AELKVK+ Sbjct: 164 CQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKE 214
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.220e-44 Identity = 106/186 (56.99%), Postives = 122/186 (65.59%), Query Frame = 3 Query: 6 MATSTMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW---WTTVGTLLGFQLTQKPLPRTVELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLDGSR*G 524 MAT + S+FVG+AV S NE GRI+MR+T + S WYG DR KYLGPFS + PSYL P W T G + R ELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA L G ++G R G Sbjct: 1 MATCAIQ-QSAFVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAG----LSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVG 177 HSP 2 Score: 92.4337 bits (228), Expect = 2.113e-18 Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1 Query: 493 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 CQVVLMG VEGYR+ GGPLGE D +YPGG+FDPLGLADDPEAFAELKVK+ Sbjct: 163 CQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.102e-43 Identity = 105/186 (56.45%), Postives = 120/186 (64.52%), Query Frame = 3 Query: 6 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW---WTTVGTLLGFQLTQKPLPRTVELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLDGSR*G 524 MATS + S+F G+ S NEL GGR +MR+T + S WYG DR KYLGPFS + PSYL P W T G + R ELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA L G ++G R G Sbjct: 1 MATSAIQ-QSAFAGQTA--LKSQNELVRKIGSFGGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAG----LSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVG 177 HSP 2 Score: 88.9669 bits (219), Expect = 2.337e-17 Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 Query: 496 QVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 QVVLMG VEGYR+ GGPLGE D +YPGG+FDPLGLADDPEAFAELKVK+ Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.455e-43 Identity = 94/152 (61.84%), Postives = 107/152 (70.39%), Query Frame = 3 Query: 90 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW---WTTVGTLLGFQLTQKPLPRTVELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLDGSR*G 524 GGR++MR+T + S WYG DR KYLGPFS + PSYL P W T G + R ELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA L G ++G R G Sbjct: 4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAG----LSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVG 149 HSP 2 Score: 90.1225 bits (222), Expect = 1.049e-17 Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 1 Query: 463 TLRASWPSGLCQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 ++ A W S QVVLMG VEGYR+ GGPLGE D +YPGG+FDPLGLADDPEAFAELKVK+ Sbjct: 128 SILAIWAS---QVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 185 The following BLAST results are available for this feature:
BLAST of CF417130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417130 ID=CF417130; Name=CF417130; organism=Citrus sinensis; type=EST; length=646bpback to top |