CF417130

Overview
NameCF417130
Unique NameCF417130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.197e-21
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1
Query:  493 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645
            CQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:   14 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 64          
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.197e-21
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1
Query:  493 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645
            CQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  163 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213          
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.197e-21
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1
Query:  493 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645
            CQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  163 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213          
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.449e-19
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 3
Query:  351 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLDGSR*G 524
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA    L G ++G R G
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVG 62          

HSP 2 Score: 90.1225 bits (222), Expect = 1.049e-17
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1
Query:  493 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645
            CQVVLMG +EGYR+ GGPLGE  DPLYPG +FDPLGLADDPEA AELKVK+
Sbjct:   48 CQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKE 98          
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.363e-15
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1
Query:  496 QVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645
            QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKVK+
Sbjct:   22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKE 72          
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.956e-12
Identity = 37/53 (69.81%), Postives = 40/53 (75.47%), Query Frame = 1
Query:  496 QVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645
            QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVK+
Sbjct:   18 QVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKE 70          
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 9.596e-12
Identity = 49/151 (32.45%), Postives = 61/151 (40.40%), Query Frame = 3
Query:    6 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLDW*VPWWTTVGTLLGFQLTQKPLPRTVELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 452
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++LD   P       L G     +   R  E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPL-GLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132          

HSP 2 Score: 40.4318 bits (93), Expect = 9.596e-12
Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  571 YPGGSFDPLGLADDPEAFAELKVKK 645
            YPGG+FDPLG + DP  F ELK+K+
Sbjct:  167 YPGGAFDPLGFSKDPAKFEELKLKE 191          
The following BLAST results are available for this feature:
BLAST of CF417130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB2D_SOLLC1.197e-2194.12Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.197e-2194.12Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.197e-2194.12Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_PINSY1.449e-1979.03Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_RAPSA6.363e-1578.43Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_EUGGR2.956e-1269.81Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB121_HORVU9.596e-1232.45Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-060 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417130 ID=CF417130; Name=CF417130; organism=Citrus sinensis; type=EST; length=646bp
GTAAAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAG
GCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCAT
CTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGT
ACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCA
AGCTACTTGGACTGGTGAGTTCCCTGGTGGACTACGGTTGGGACACTGCT
GGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGGAACTCGAAG
TCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCG
GAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAA
GGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACC
CAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTTGCCAGGT
GGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCG
GTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGT
TTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGAAAT
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