CF417130
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.197e-21 Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1 Query: 493 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 CQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+ Sbjct: 14 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 64
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.197e-21 Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1 Query: 493 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 CQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+ Sbjct: 163 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.197e-21 Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1 Query: 493 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 CQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK+ Sbjct: 163 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.449e-19 Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 3 Query: 351 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLDGSR*G 524 ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA L G ++G R G Sbjct: 1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVG 62 HSP 2 Score: 90.1225 bits (222), Expect = 1.049e-17 Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 Query: 493 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 CQVVLMG +EGYR+ GGPLGE DPLYPG +FDPLGLADDPEA AELKVK+ Sbjct: 48 CQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKE 98
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.363e-15 Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1 Query: 496 QVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 QV+LMGAVEGYR+AG GPLGE D LYPGGSFDPL DPEAFAELKVK+ Sbjct: 22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKE 72
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.956e-12 Identity = 37/53 (69.81%), Postives = 40/53 (75.47%), Query Frame = 1 Query: 496 QVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 645 QV+LMGAVEGYR A G GE D LYPGG FDPLGLADDP+ F ELKVK+ Sbjct: 18 QVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKE 70
BLAST of CF417130 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 50.0618 bits (118), Expect = 9.596e-12 Identity = 49/151 (32.45%), Postives = 61/151 (40.40%), Query Frame = 3 Query: 6 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLDW*VPWWTTVGTLLGFQLTQKPLPRTVELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 452 MA+S+ S S VG LAPS +G T S V+ + W F G+P P++LD P L G + R E E+ HCRWAML G + PE L G W KA +G YLGNP Sbjct: 1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPL-GLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132 HSP 2 Score: 40.4318 bits (93), Expect = 9.596e-12 Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 1 Query: 571 YPGGSFDPLGLADDPEAFAELKVKK 645 YPGG+FDPLG + DP F ELK+K+ Sbjct: 167 YPGGAFDPLGFSKDPAKFEELKLKE 191 The following BLAST results are available for this feature:
BLAST of CF417130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417130 ID=CF417130; Name=CF417130; organism=Citrus sinensis; type=EST; length=646bpback to top |