CF417134

Overview
NameCF417134
Unique NameCF417134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417134 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.979e-12
Identity = 34/92 (36.96%), Postives = 46/92 (50.00%), Query Frame = 1
Query:  148 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWM---------CEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHER 387
            CD C+ A A V C  D A LC  CD+ IH      +KH R+ +         C++C++  A + C  D A LC  CD  IH AN  +  H+R
Sbjct:    5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQR 96          
BLAST of CF417134 vs. ExPASy Swiss-Prot
Match: COL10_ARATH (Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.555e-11
Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = 1
Query:  148 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCMNK-HARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSA--NPLARRHERLPIEPFFDSADSIVKSSAFNF 450
            CD C    + V+CR D+A LCL+CD  +H  N ++K H+R  +CE C   PA+V C  +  +LC  CD   H    +     H+R  I  +     S   SS ++F
Sbjct:    5 CDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSF 110          
BLAST of CF417134 vs. ExPASy Swiss-Prot
Match: COL9_ARATH (Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.523e-11
Identity = 37/113 (32.74%), Postives = 58/113 (51.33%), Query Frame = 1
Query:  148 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCMNK-HARVWMCEVCEQAPAAVTCKADAAALCVTCD---------NDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNF 450
            CD C    + V+CR D+A LCL+CD  +H  N ++K H+R  +CE C   PA V C  +  +LC  CD         N+  S++   ++H+R  I  +     S   +S ++F
Sbjct:    5 CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSF 117          
BLAST of CF417134 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 35/92 (38.04%), Postives = 45/92 (48.91%), Query Frame = 1
Query:  148 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWM---------CEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHER 387
            C+ C+AA A V C  D A LC  CD +IH       KH RV +         C++C++A     C  D A LC  CD  IH+ NP    H+R
Sbjct:    5 CNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQR 96          
The following BLAST results are available for this feature:
BLAST of CF417134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
STO_ARATH6.979e-1236.96Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
COL10_ARATH1.555e-1134.91Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsi... [more]
COL9_ARATH4.523e-1132.74Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis... [more]
STHY_ARATH5.908e-1138.04Probable salt tolerance-like protein At1g78600 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-064 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_G2 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417134 ID=CF417134; Name=CF417134; organism=Citrus sinensis; type=EST; length=465bp
AAACTAGTCTTTGCATTCCGCCACGTTTACTCCAGAGACCAAAACTCAAA
GAAAGAAAGAAAGAGGCTTTATTTAGTAATGCCCATGGGAATTGAATTAC
ATAGCGTGAAGGTTATTTCCGGCGGGTGGAGCGTGGCGGTGAAGCCATGC
GACACGTGCAAAGCGGCGGCGGCGGCTGTTTTCTGCAGAGTTGACTCTGC
TTTCCTATGCCTGAACTGCGATTTAAGAATCCACAATTGCATGAACAAAC
ACGCGCGTGTCTGGATGTGCGAGGTCTGCGAGCAGGCCCCTGCGGCTGTC
ACGTGTAAGGCTGATGCGGCTGCCTTGTGTGTCACGTGCGACAATGATAT
CCACTCTGCCAACCCTTTAGCCCGGCGCCATGAACGCCTCCCTATTGAGC
CGTTCTTCGACTCGGCTGACTCGATTGTCAAGTCGTCGGCTTTTAACTTC
CTGGTTCCGAGTGAT
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