CF417135 | Citrus Genome Database

Overview


Name	CF417135
Unique Name	CF417135
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	708

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.069e-38
Identity = 57/97 (58.76%), Postives = 63/97 (64.95%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXNDLYPGGXYFDPLGLADDPVTFAE 706
            PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+        G      V    L  G  + +YPGG  FDPLGLADDP  FAE
Sbjct:   87 PEILSK-NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEG-LDKIYPGGA-FDPLGLADDPEAFAE 180

HSP 2 Score: 80.8777 bits (198), Expect = 7.069e-38
Identity = 38/56 (67.86%), Postives = 40/56 (71.43%), Query Frame = 1

Query:  250 PFQHRLHHT*LESFQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            PF  +        F  DYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ P
Sbjct:   32 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP 87

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.193e-38
Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+  +     GA     ++   L  GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:  115 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPL--GEVVDPLYPGGA-FDPLGLADDPEAFAE 208

HSP 2 Score: 80.4925 bits (197), Expect = 9.193e-38
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.193e-38
Identity = 57/97 (58.76%), Postives = 63/97 (64.95%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXNDLYPGGXYFDPLGLADDPVTFAE 706
            PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+        G      V    L  G  + +YPGG  FDPLGLADDP  FAE
Sbjct:  115 PEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEG-LDPIYPGGA-FDPLGLADDPDAFAE 208

HSP 2 Score: 80.4925 bits (197), Expect = 9.193e-38
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = 1

Query:  250 PFQHRLHHT*LESFQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            PF  ++       F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   60 PFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.194e-38
Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+  +     GA     ++   L  GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:  111 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPL--GEVVDPLYPGGS-FDPLGLADDPEAFAE 204

HSP 2 Score: 80.4925 bits (197), Expect = 9.194e-38
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   69 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 111

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.198e-37
Identity = 59/102 (57.84%), Postives = 69/102 (67.65%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAV----LGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+    + + G   G R      +A   +GE  D +YPGG  FDPLGLADDP  FAE
Sbjct:  105 PELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR------IAGGPLGEVTDPIYPGGS-FDPLGLADDPEAFAE 198

HSP 2 Score: 80.4925 bits (197), Expect = 1.198e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   63 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 105

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.560e-37
Identity = 60/98 (61.22%), Postives = 66/98 (67.35%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+        GA     V+   L  GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:  117 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPL--GEVTDPLYPGGS-FDPLGLADDPEAFAE 210

HSP 2 Score: 79.337 bits (194), Expect = 1.560e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   75 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.560e-37
Identity = 58/102 (56.86%), Postives = 68/102 (66.67%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG----IPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+      + G   G R      +A   +GE  D +YPGG  FDPLGLADDP  FAE
Sbjct:  113 PELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYR------IAGGPLGEVTDPIYPGGS-FDPLGLADDPEAFAE 206

HSP 2 Score: 80.4925 bits (197), Expect = 1.560e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   71 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 113

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-37
Identity = 59/102 (57.84%), Postives = 69/102 (67.65%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAV----LGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+    + + G   G R      +A   +GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:  112 PELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR------IAGGPLGEVVDPLYPGGS-FDPLGLADDPEAFAE 205

HSP 2 Score: 80.4925 bits (197), Expect = 2.033e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   70 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 112

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.448e-37
Identity = 60/102 (58.82%), Postives = 68/102 (66.67%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG----IPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+      + G   G R      +A   +GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:  119 PELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR------IAGGPLGEVVDPLYPGGS-FDPLGLADDPEAFAE 212

HSP 2 Score: 79.337 bits (194), Expect = 3.448e-37
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+ P
Sbjct:   77 FPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFP 119

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.449e-37
Identity = 60/102 (58.82%), Postives = 68/102 (66.67%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG----IPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+      + G   G R      +A   +GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:  118 PELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR------IAGGPLGEVVDPLYPGGS-FDPLGLADDPEAFAE 211

HSP 2 Score: 79.337 bits (194), Expect = 3.449e-37
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+ P
Sbjct:   76 FPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFP 118

The following BLAST results are available for this feature:

BLAST of CF417135 vs. ExPASy Swiss-Prot

BLAST of CF417135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60


Match Name	E-value	Identity	Description
CB25_SOLLC	7.069e-38	58.76	Chlorophyll a-b binding protein 5, chloroplastic (...	[more]
CB21_ORYSJ	9.193e-38	59.18	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB21_GOSHI	9.193e-38	58.76	Chlorophyll a-b binding protein 151, chloroplastic...	[more]
CB22_ORYSJ	9.194e-38	59.18	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_CUCSA	1.198e-37	57.84	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB27_TOBAC	1.560e-37	61.22	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]
CB23_SOYBN	1.560e-37	56.86	Chlorophyll a-b binding protein 3, chloroplastic O...	[more]
CB21_MAIZE	2.033e-37	57.84	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB22_PEA	3.448e-37	58.82	Chlorophyll a-b binding protein AB80, chloroplasti...	[more]
CB28_PEA	3.449e-37	58.82	Chlorophyll a-b binding protein 8, chloroplastic O...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-065 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_G3 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417135 ID=CF417135; Name=CF417135; organism=Citrus sinensis; type=EST; length=708bp
GTCTTCAGACACATATTAACATCACAGTTCCAACCGACACAACATCCATA
ATACCAACTCTCAGGACAATGGCATCAATAATGGCGGCTGCTACTGCTAG
CTCTAGCACTTCTCTTAGGGCAACCCCATTTCTTGGCCAGAGTAGGACAA
CTGCTAACGCTCTAAAAGATGTTGTTCCGATGGGGAATGCCAAGTACACA
ATGGGAAATGAACTGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACC
CTTTTCAGCACAGACTCCATCATACTTGACTGGAGAGTTTCCAGGTGGAC
TATGGATGGGACACTGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAG
GAACAGGGCTCTTGAGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCAC
TAGGCTGCATCCACCCCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTT
CAAGGAACCGGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTG
GCCTTGACTACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTG
GCTGTCCTGGGNATTCCAGGTTGTCCTCATGGGGCTCGTTGNAGGGTTTC
CGTATCAATGGCCTCCCTGGNNGTCGGAGAANGAAACGACCTCTACCCTG
GTGGCCNATATTTTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTT
GCTGAACT