CF417135

Overview
NameCF417135
Unique NameCF417135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10244 contig Csv1_Contig10244:94..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.493e-37
Identity = 60/102 (58.82%), Postives = 69/102 (67.65%), Query Frame = 2 
Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAV----LGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+    + + G   G R      +A   +GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:  117 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR------IAGGPLGEVVDPLYPGGS-FDPLGLADDPEAFAE 210

HSP 2 Score: 79.337 bits (194), Expect = 4.493e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   75 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117
[Close]
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.493e-37
Identity = 60/102 (58.82%), Postives = 68/102 (66.67%), Query Frame = 2 
Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG----IPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+      + G   G R      +A   +GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:  117 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR------IAGGPLGEVVDPLYPGGS-FDPLGLADDPEAFAE 210

HSP 2 Score: 79.337 bits (194), Expect = 4.493e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   75 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117
[Close]
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.493e-37
Identity = 57/89 (64.04%), Postives = 61/89 (68.54%), Query Frame = 2 
Query:  443 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+        GA     V+   L  GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:  124 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL--GEVIDPLYPGGS-FDPLGLADDPEAFAE 209

HSP 2 Score: 79.337 bits (194), Expect = 4.493e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   74 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 116
[Close]
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.493e-37
Identity = 58/98 (59.18%), Postives = 66/98 (67.35%), Query Frame = 2 
Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+        GA     V+   L  GE  D LYPGG  FDPLGLADDP  FA+
Sbjct:  115 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPL--GEVVDPLYPGGT-FDPLGLADDPEAFAD 208

HSP 2 Score: 80.4925 bits (197), Expect = 4.493e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115
[Close]
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.853e-37
Identity = 56/89 (62.92%), Postives = 61/89 (68.54%), Query Frame = 2 
Query:  443 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            + F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+        GA     V+   L  GE  D LYPGG  FDPLGLA+DP  FAE
Sbjct:  125 IKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL--GEVIDPLYPGGS-FDPLGLAEDPEAFAE 210

HSP 2 Score: 79.7221 bits (195), Expect = 5.853e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   75 FPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117
[Close]
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.880e-37
Identity = 59/102 (57.84%), Postives = 69/102 (67.65%), Query Frame = 2 
Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAV----LGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+    + + G   G R      +A   +GE  D +YPGG  FDPLGLADDP  FAE
Sbjct:   56 PELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR------IAGGPLGEVTDPIYPGGS-FDPLGLADDPEAFAE 149

HSP 2 Score: 78.1814 bits (191), Expect = 5.880e-37
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH  WAMLGALGC+ P
Sbjct:   14 FPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFP 56
[Close]
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.621e-37
Identity = 59/102 (57.84%), Postives = 68/102 (66.67%), Query Frame = 2 
Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG----IPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+      + G   G R      +A   +GE  D +YPGG  FDPLGLA+DP  FAE
Sbjct:  124 PELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR------IAGGPLGEVTDPIYPGGS-FDPLGLAEDPEAFAE 217

HSP 2 Score: 78.5666 bits (192), Expect = 7.621e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   82 FPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFP 124
[Close]
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.624e-37
Identity = 57/98 (58.16%), Postives = 66/98 (67.35%), Query Frame = 2 
Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+        GA     V+  +  +GE  D LYPGG  FDPLGLA DP  FAE
Sbjct:  116 PELLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA-GNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAE 210

HSP 2 Score: 81.6481 bits (200), Expect = 7.624e-37
Identity = 36/43 (83.72%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ P
Sbjct:   74 FPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP 116
[Close]
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.624e-37
Identity = 57/98 (58.16%), Postives = 66/98 (67.35%), Query Frame = 2 
Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+        GA     V+  +  +GE  D LYPGG  FDPLGLA DP  FAE
Sbjct:  116 PELLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA-GNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAE 210

HSP 2 Score: 81.6481 bits (200), Expect = 7.624e-37
Identity = 36/43 (83.72%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ P
Sbjct:   74 FPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP 116
[Close]
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.932e-37
Identity = 59/98 (60.20%), Postives = 66/98 (67.35%), Query Frame = 2 
Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+        GA     V+   L  GE  D LYPGG  FDPLGLA+DP  FAE
Sbjct:  117 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL--GEVVDPLYPGGS-FDPLGLAEDPEAFAE 210

HSP 2 Score: 79.337 bits (194), Expect = 9.932e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   75 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117
The following BLAST results are available for this feature:
BLAST of CF417135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB2G_SOLLC4.493e-3758.82Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2A_SPIOL4.493e-3758.82Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PETSP4.493e-3764.04Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB29_MAIZE4.493e-3759.18Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB23_PETSP5.853e-3762.92Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_CUCSA5.880e-3757.84Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2B_PINSY7.621e-3757.84Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_ARATH7.624e-3758.16Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH7.624e-3758.16Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB25_TOBAC9.932e-3760.20Chlorophyll a-b binding protein 50, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-065 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_G3 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417135 ID=CF417135; Name=CF417135; organism=Citrus sinensis; type=EST; length=708bp
GTCTTCAGACACATATTAACATCACAGTTCCAACCGACACAACATCCATA
ATACCAACTCTCAGGACAATGGCATCAATAATGGCGGCTGCTACTGCTAG
CTCTAGCACTTCTCTTAGGGCAACCCCATTTCTTGGCCAGAGTAGGACAA
CTGCTAACGCTCTAAAAGATGTTGTTCCGATGGGGAATGCCAAGTACACA
ATGGGAAATGAACTGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACC
CTTTTCAGCACAGACTCCATCATACTTGACTGGAGAGTTTCCAGGTGGAC
TATGGATGGGACACTGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAG
GAACAGGGCTCTTGAGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCAC
TAGGCTGCATCCACCCCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTT
CAAGGAACCGGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTG
GCCTTGACTACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTG
GCTGTCCTGGGNATTCCAGGTTGTCCTCATGGGGCTCGTTGNAGGGTTTC
CGTATCAATGGCCTCCCTGGNNGTCGGAGAANGAAACGACCTCTACCCTG
GTGGCCNATATTTTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTT
GCTGAACT
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