CF417135 | Citrus Genome Database

Overview


Name	CF417135
Unique Name	CF417135
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	708

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.932e-37
Identity = 59/102 (57.84%), Postives = 69/102 (67.65%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAV----LGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+    + + G   G R      +A   +GE  D LYPGG  FDPLGLA+DP  FAE
Sbjct:  116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR------VAGEPLGEVVDPLYPGGS-FDPLGLAEDPEAFAE 209

HSP 2 Score: 79.337 bits (194), Expect = 9.932e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   74 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 116

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.932e-37
Identity = 59/98 (60.20%), Postives = 66/98 (67.35%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+        GA     V+   L  GE  D LYPGG  FDPLGLA+DP  FAE
Sbjct:  117 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL--GEVVDPLYPGGS-FDPLGLAEDPEAFAE 210

HSP 2 Score: 79.337 bits (194), Expect = 9.932e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   75 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.932e-37
Identity = 59/98 (60.20%), Postives = 66/98 (67.35%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+        GA     V+   L  GE  D LYPGG  FDPLGLA+DP  FAE
Sbjct:  116 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL--GEVVDPLYPGGS-FDPLGLAEDPEAFAE 209

HSP 2 Score: 79.337 bits (194), Expect = 9.932e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   74 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 116

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.932e-37
Identity = 58/98 (59.18%), Postives = 65/98 (66.33%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+        GA     V+     +GE  D LYPGG  FDPLGLA DP  FAE
Sbjct:  115 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA-GEGPLGEAEDLLYPGGS-FDPLGLATDPEAFAE 209

HSP 2 Score: 80.4925 bits (197), Expect = 9.932e-37
Identity = 36/43 (83.72%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ P
Sbjct:   73 FPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP 115

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.934e-37
Identity = 59/98 (60.20%), Postives = 66/98 (67.35%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+        GA     V+   L  GE  D LYPGG  FDPLGLA+DP  FAE
Sbjct:  115 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPL--GEVVDPLYPGGS-FDPLGLAEDPEAFAE 208

HSP 2 Score: 79.337 bits (194), Expect = 9.934e-37
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   73 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.294e-36
Identity = 59/102 (57.84%), Postives = 69/102 (67.65%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAV----LGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+    + + G   G R      +A   +GE  D LYPGG  FDPLGLA+DP  FAE
Sbjct:  115 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR------IAGGPLGEVVDPLYPGGS-FDPLGLAEDPEAFAE 208

HSP 2 Score: 79.337 bits (194), Expect = 1.294e-36
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   73 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.686e-36
Identity = 58/102 (56.86%), Postives = 68/102 (66.67%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAV----LGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+    + + G   G R      +A   +GE  D LYPGG  FDPLGLADDP  F E
Sbjct:  115 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR------IAGGPLGEVVDPLYPGGS-FDPLGLADDPEAFGE 208

HSP 2 Score: 79.337 bits (194), Expect = 1.686e-36
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   73 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.694e-36
Identity = 56/95 (58.95%), Postives = 61/95 (64.21%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXNDLYPGGXYFDPLGLADDPVTF 700
            PE+L K   V F E VWFKAG+QIF EGGLDYLGNPNLVHAQSILA+        GA     V    L  G  + LYPGG  FDPLGLA+DP  F
Sbjct:  114 PELLAK-NGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEG-LDQLYPGGA-FDPLGLAEDPEAF 205

HSP 2 Score: 79.7221 bits (195), Expect = 1.694e-36
Identity = 37/56 (66.07%), Postives = 40/56 (71.43%), Query Frame = 1

Query:  250 PFQHRLHHT*LESFQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            PF  +        F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   59 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.860e-36
Identity = 60/98 (61.22%), Postives = 66/98 (67.35%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+        GA     V+   L  GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:  117 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL--GEVVDPLYPGGS-FDPLGLADDPEAFAE 210

HSP 2 Score: 76.2554 bits (186), Expect = 2.860e-36
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTA LSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   75 FPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFP 117

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.854e-36
Identity = 57/98 (58.16%), Postives = 63/98 (64.29%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFK G+QIFSEGGL YLGNP+LVHAQSILA+        GA     V+   L  GE  D LYPGG  FDPLGLADD   FAE
Sbjct:  114 PELLAR-NGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL--GEVVDPLYPGGS-FDPLGLADDAEAFAE 207

HSP 2 Score: 82.8037 bits (203), Expect = 4.854e-36
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIHGRWAMLGALGC+ P
Sbjct:   72 FPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFP 114

The following BLAST results are available for this feature:

BLAST of CF417135 vs. ExPASy Swiss-Prot

BLAST of CF417135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60


Match Name	E-value	Identity	Description
CB25_NICPL	9.932e-37	57.84	Chlorophyll a-b binding protein E, chloroplastic O...	[more]
CB24_TOBAC	9.932e-37	60.20	Chlorophyll a-b binding protein 40, chloroplastic ...	[more]
CB21_TOBAC	9.932e-37	60.20	Chlorophyll a-b binding protein 16, chloroplastic ...	[more]
CB21_SINAL	9.932e-37	59.18	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB22_TOBAC	9.934e-37	60.20	Chlorophyll a-b binding protein 21, chloroplastic ...	[more]
CB2B_SOLLC	1.294e-36	57.84	Chlorophyll a-b binding protein 1B, chloroplastic ...	[more]
CB22_MAIZE	1.686e-36	56.86	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_SILPR	1.694e-36	58.95	Chlorophyll a-b binding protein, chloroplastic (Fr...	[more]
CB25_PETSP	2.860e-36	61.22	Chlorophyll a-b binding protein 91R, chloroplastic...	[more]
CB22_HORVU	4.854e-36	58.16	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-065 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_G3 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417135 ID=CF417135; Name=CF417135; organism=Citrus sinensis; type=EST; length=708bp
GTCTTCAGACACATATTAACATCACAGTTCCAACCGACACAACATCCATA
ATACCAACTCTCAGGACAATGGCATCAATAATGGCGGCTGCTACTGCTAG
CTCTAGCACTTCTCTTAGGGCAACCCCATTTCTTGGCCAGAGTAGGACAA
CTGCTAACGCTCTAAAAGATGTTGTTCCGATGGGGAATGCCAAGTACACA
ATGGGAAATGAACTGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACC
CTTTTCAGCACAGACTCCATCATACTTGACTGGAGAGTTTCCAGGTGGAC
TATGGATGGGACACTGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAG
GAACAGGGCTCTTGAGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCAC
TAGGCTGCATCCACCCCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTT
CAAGGAACCGGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTG
GCCTTGACTACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTG
GCTGTCCTGGGNATTCCAGGTTGTCCTCATGGGGCTCGTTGNAGGGTTTC
CGTATCAATGGCCTCCCTGGNNGTCGGAGAANGAAACGACCTCTACCCTG
GTGGCCNATATTTTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTT
GCTGAACT