CF417135 | Citrus Genome Database

Overview


Name	CF417135
Unique Name	CF417135
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	708

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig10244	contig	Csv1_Contig10244:94..796.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.867e-36
Identity = 58/102 (56.86%), Postives = 67/102 (65.69%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG----IPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+      + G   G R      +A   +GE  D LYPGG  FDPLGLA+ P  FAE
Sbjct:   78 PELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR------IAGGPLGEVVDPLYPGGS-FDPLGLAEVPEAFAE 171

HSP 2 Score: 80.4925 bits (197), Expect = 4.867e-36
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   36 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 78

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.322e-36
Identity = 57/102 (55.88%), Postives = 68/102 (66.67%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAV----LGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFK G+QIFS+GGLDYLGNP+LVHAQSILA+    + + G   G R      +A   +GE  D LYPGG  FDPLGLA+DP  FAE
Sbjct:  117 PELLAR-NGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR------VAGEPLGEVVDPLYPGGS-FDPLGLAEDPEAFAE 210

HSP 2 Score: 79.337 bits (194), Expect = 6.322e-36
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   75 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.322e-36
Identity = 53/88 (60.23%), Postives = 59/88 (67.05%), Query Frame = 2

Query:  443 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXNDLYPGGXYFDPLGLADDPVTFAE 706
            V F E VW KAG+QIFSEGGLDYLGNP+LVHAQSILA+        GA     V+   L V   + LYPGG  FDPLGLA+DP  FAE
Sbjct:  125 VKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGV-VVDPLYPGGS-FDPLGLAEDPEAFAE 210

HSP 2 Score: 79.337 bits (194), Expect = 6.322e-36
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   75 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.073e-35
Identity = 57/98 (58.16%), Postives = 65/98 (66.33%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSIL++        GA     V+   L  GE  D LYPGG  FDPLGLA+DP   AE
Sbjct:  114 PELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPL--GEIVDPLYPGGS-FDPLGLAEDPERSAE 207

HSP 2 Score: 80.4925 bits (197), Expect = 1.073e-35
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   72 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 114

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.820e-35
Identity = 56/89 (62.92%), Postives = 60/89 (67.42%), Query Frame = 2

Query:  443 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            V F E VWFKAG+QIF EGGLDYLGNP+LVHAQSILA+        GA     V+   L  GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:  124 VKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL--GEVIDPLYPGGS-FDPLGLADDPEAFAE 209

HSP 2 Score: 75.485 bits (184), Expect = 1.820e-35
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTAGLSADP  FA+NR LEVIH RW MLGALGC+ P
Sbjct:   74 FPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFP 116

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.559e-34
Identity = 55/97 (56.70%), Postives = 61/97 (62.89%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXNDLYPGGXYFDPLGLADDPVTFAE 706
            PE+L K   + F E VWFKAGAQIFSEGGLDY GNPNL+HAQSILA+        G      V   +L  G  + L PGG  FDPLGLADDP   AE
Sbjct:  116 PELLAK-NGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEG-LDPLLPGGA-FDPLGLADDPEACAE 209

HSP 2 Score: 75.8702 bits (185), Expect = 2.559e-34
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDTA +SADPE FA+NR LEVIH RWAMLGALGC+ P
Sbjct:   74 FPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFP 116

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.451e-30
Identity = 55/98 (56.12%), Postives = 62/98 (63.27%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706
            PE+L +   V F E VWFKAG+QIFSEGGL + GNP+LVHAQSILA+        GA     V+   L  GE  D LY GG  FDPLGL DDP  FAE
Sbjct:  114 PELLAR-NGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRL--GEVVDPLYLGGS-FDPLGLGDDPERFAE 207

HSP 2 Score: 68.9366 bits (167), Expect = 3.451e-30
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 1

Query:  289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            F  DYGWDT GLSADPE FA+NR LEVIH RWA+   LGC+ P
Sbjct:   72 FPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFP 114

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.681e-29
Identity = 49/99 (49.49%), Postives = 62/99 (62.63%), Query Frame = 2

Query:  413 TPEVLEKWLRVDFKEP-VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXNDLYPGGXYFDPLGLADDPVTFAE 706
            TPE+L     + F +  +WFKAGA IF +GGL+YLGNP+L+HAQ+I+A L +     G      V+      G  + LYP G  FDPLGLADDP TFAE
Sbjct:  121 TPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEG-LDPLYP-GEAFDPLGLADDPDTFAE 217

HSP 2 Score: 66.6254 bits (161), Expect = 1.681e-29
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 1

Query:  238 STWDPFQHRLHHT*LESFQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            S WD  QH+        F  DYGWDTAGLSADPE F R R LE+IH R  +LGALG + P
Sbjct:   64 SGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTP 122

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 53/88 (60.23%), Postives = 56/88 (63.64%), Query Frame = 2

Query:  443 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXNDLYPGGXYFDPLGLADDPVTFAE 706
            V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+        G      V    L  G  + LYPG   FDPLGLADDP   AE
Sbjct:    8 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEG-LDPLYPGDA-FDPLGLADDPEAKAE 93

[Close]

BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.147e-14
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1

Query:  298 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417
            DYG+D  GL   PE FA+ +A E+IH RWAMLGA G I P
Sbjct:   92 DYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIP 131

HSP 2 Score: 40.0466 bits (92), Expect = 1.147e-14
Identity = 33/93 (35.48%), Postives = 44/93 (47.31%), Query Frame = 2

Query:  416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGAR-XRVSVSMASLXVGEXNDLYPGGXYFDPLGLADDP 691
            PE L K+      E VWFK GA +     L+Y G    +    +LAV+       GA   R++  +        + L+PGG  FDPLGLA DP
Sbjct:  131 PEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVAEVVLLGGAEYYRITNGL-----DFEDKLHPGGP-FDPLGLAKDP 215

HSP 3 Score: 26.5646 bits (57), Expect = 1.147e-14
Identity = 13/30 (43.33%), Postives = 16/30 (53.33%), Query Frame = 3

Query:  216 WYGPDRVKYLGP---FSAQTPSYLTGEFPG 296
            WYGPDR  +L       ++ P YL GE  G
Sbjct:   62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAG 91

The following BLAST results are available for this feature:

BLAST of CF417135 vs. ExPASy Swiss-Prot

BLAST of CF417135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60


Match Name	E-value	Identity	Description
CB21_PEA	4.867e-36	56.86	Chlorophyll a-b binding protein AB96 (Fragment) OS...	[more]
CB23_NICPL	6.322e-36	55.88	Chlorophyll a-b binding protein C, chloroplastic O...	[more]
CB22_PETSP	6.322e-36	60.23	Chlorophyll a-b binding protein 22L, chloroplastic...	[more]
CB23_APIGR	1.073e-35	58.16	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_PETSP	1.820e-35	62.92	Chlorophyll a-b binding protein 13, chloroplastic ...	[more]
CB21_PINTH	2.559e-34	56.70	Chlorophyll a-b binding protein type I, chloroplas...	[more]
CB48_MAIZE	3.451e-30	56.12	Chlorophyll a-b binding protein 48, chloroplastic ...	[more]
CB2_DUNSA	1.681e-29	49.49	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB22_PINSY	7.253e-18	60.23	Chlorophyll a-b binding protein type 2 member 2 (F...	[more]
CB26_ARATH	1.147e-14	60.00	Chlorophyll a-b binding protein CP26, chloroplasti...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-065 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_G3 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417135 ID=CF417135; Name=CF417135; organism=Citrus sinensis; type=EST; length=708bp
GTCTTCAGACACATATTAACATCACAGTTCCAACCGACACAACATCCATA
ATACCAACTCTCAGGACAATGGCATCAATAATGGCGGCTGCTACTGCTAG
CTCTAGCACTTCTCTTAGGGCAACCCCATTTCTTGGCCAGAGTAGGACAA
CTGCTAACGCTCTAAAAGATGTTGTTCCGATGGGGAATGCCAAGTACACA
ATGGGAAATGAACTGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACC
CTTTTCAGCACAGACTCCATCATACTTGACTGGAGAGTTTCCAGGTGGAC
TATGGATGGGACACTGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAG
GAACAGGGCTCTTGAGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCAC
TAGGCTGCATCCACCCCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTT
CAAGGAACCGGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTG
GCCTTGACTACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTG
GCTGTCCTGGGNATTCCAGGTTGTCCTCATGGGGCTCGTTGNAGGGTTTC
CGTATCAATGGCCTCCCTGGNNGTCGGAGAANGAAACGACCTCTACCCTG
GTGGCCNATATTTTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTT
GCTGAACT