CF417141

Overview
NameCF417141
Unique NameCF417141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_ECO45 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.477e-17
Identity = 37/87 (42.53%), Postives = 49/87 (56.32%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   +LKPSE+  +T L+LAE  K+     PA +I +        G PL  HP V  ++ TGS ATG  I++  AP +K
Sbjct:  158 KLAPALAAGNCVVLKPSEITPLTALKLAELAKD---IFPAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAPSIK 241          

HSP 2 Score: 50.8322 bits (120), Expect = 1.477e-17
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 1
Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A  D I  +   F ++A  A  L+          LE   S + ++P+ G+   I PWNYP
Sbjct:   54 EWGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPL-GVVASIAPWNYP 151          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_ECO27 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.477e-17
Identity = 37/87 (42.53%), Postives = 49/87 (56.32%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   +LKPSE+  +T L+LAE  K+     PA +I +        G PL  HP V  ++ TGS ATG  I++  AP +K
Sbjct:  158 KLAPALAAGNCVVLKPSEITPLTALKLAELAKD---IFPAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAPSIK 241          

HSP 2 Score: 50.8322 bits (120), Expect = 1.477e-17
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 1
Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A  D I  +   F ++A  A  L+          LE   S + ++P+ G+   I PWNYP
Sbjct:   54 EWGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPL-GVVASIAPWNYP 151          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 1.917e-17
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 3
Query:  312 IDYSMELSLY*WPHGKWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPM-VKPVSL 626
            I ++  L ++ W  G   PAL+ G   ++KP+E   +T L +   +KE G   P  + + P + P AGA + SH  VDK+AFTGS   G  I  AA    +K VSL
Sbjct:  167 IPWNFPLLMFLWKIG---PALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFP-PGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSL 268          

HSP 2 Score: 45.0542 bits (105), Expect = 1.917e-17
Identity = 35/116 (30.17%), Postives = 56/116 (48.28%), Query Frame = 1
Query:    1 ARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFE---YYADLAEGLDAKQKAPVSLPLE-NFKSYVLKEPIWGLFGLITPWNYP 336
            ARQA     G  W +   + R + L  +A  I      LA +E ++ GK    A   + D+ GC +   Y A  A+ +  +     ++P++ NF +Y   EP+ G+ G I PWN+P
Sbjct:   67 ARQAFQI--GSPWRTMDASERGRLLNKLADLIERDHLLLATMEAMNGGKLFSNAY--LMDLGGCIKTLRYCAGWADKIQGR-----TIPMDGNFFTYTRSEPV-GVCGQIIPWNFP 172          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ALDH2_LEITA (Aldehyde dehydrogenase, mitochondrial OS=Leishmania tarentolae GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.917e-17
Identity = 40/91 (43.96%), Postives = 50/91 (54.95%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPM-VKPVSL 626
            K  PALA G   +LKP+E   +T + L E V E G       IL P +   AG+ +  H  VDKIAFTGS A G ++M  AA   +K VSL
Sbjct:  175 KLSPALAMGNTVVLKPAEQTPLTAVRLGEMVMEAGYPDGVLNIL-PGFGATAGSEIARHMDVDKIAFTGSTAVGHQVMQMAAETNLKKVSL 264          

HSP 2 Score: 48.1358 bits (113), Expect = 1.917e-17
Identity = 33/94 (35.11%), Postives = 48/94 (51.06%), Query Frame = 1
Query:   58 FRAKYLRAIAAKITERKSELANLETIDCGKPLEEAV-WDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +R   +  +A  + +   E+A LE++D GKP E A+  D+     CF Y A LA+    K    V     NF   V ++PI G+ G I PWN+P
Sbjct:   80 WRRNLMLRLADILEKNSKEMAALESLDNGKPYEVALNVDVALSVECFRYCAGLAD----KVNGTVPPRSGNFLGIVKRQPI-GVCGQIIPWNFP 168          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: BETB_RHOS4 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=betB PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.919e-17
Identity = 38/90 (42.22%), Postives = 50/90 (55.56%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            K  PALA G A + KPSE+  +  L+LAE + E G  LP  L          GA LV+   V K++ TGS  TG R+ AAAA  V+ V++
Sbjct:  161 KAAPALALGNAMVFKPSEVTPLGALKLAEILIEAG--LPPGLFNVVQGRGAVGASLVTDSRVAKVSLTGSVPTGRRVYAAAAEGVRHVTM 248          

HSP 2 Score: 52.7582 bits (125), Expect = 1.919e-17
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = 1
Query:   37 WSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEA-VWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYPS 339
            W++     RA+ LR  +  I     EL+ LET+D GKPL+E  V D    A   E++A LA  +  +     ++PL     Y ++EP+ GL   I  WNYPS
Sbjct:   60 WAAMRPVERARILRRASDLIRAHNEELSLLETLDTGKPLQETLVADWASGADALEFFAGLAPVVTGE-----TVPLGQDFVYTIREPL-GLCVGIGAWNYPS 155          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: DMPC_PSEUF (2-hydroxymuconic semialdehyde dehydrogenase OS=Pseudomonas sp. (strain CF600) GN=dmpC PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.494e-17
Identity = 39/102 (38.24%), Postives = 52/102 (50.98%), Query Frame = 3
Query:  318 YSMELSLY*WPHGKWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVS 623
            +++ L L  W  G   PALA G   ++KPSE   +T   L E ++  G     + ++       AGA L  HP V+ I FTG   TG  IM AAA  V+PVS
Sbjct:  154 WNLPLLLMTWKVG---PALACGNTVVVKPSEETPLTTALLGEVMQAAGVPAGVYNVVHGFGPDSAGAFLTEHPDVNAITFTGETRTGEAIMRAAAKGVRPVS 252          

HSP 2 Score: 46.9802 bits (110), Expect = 2.494e-17
Identity = 32/101 (31.68%), Postives = 48/101 (47.52%), Query Frame = 1
Query:   37 WSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVW-DIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            W   S + RA+ L  +A  IT R  E    E +D GKP   A   DI   A  F+ +ADL + +  +     +       +Y ++ P  G+ G+I+PWN P
Sbjct:   58 WGKMSVSERAEILHRVADGITARFDEFLEAECLDTGKPKSLASHIDIPRGAANFKVFADLLKNVATEAFEMATPDGSGAINYAVRRPK-GVIGVISPWNLP 157          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_SHISS (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella sonnei (strain Ss046) GN=ydcW PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.496e-17
Identity = 37/87 (42.53%), Postives = 49/87 (56.32%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   +LKPSE+  +T L+LAE  K+     PA +I +        G PL  HP V  ++ TGS ATG  I++ AA  +K
Sbjct:  158 KLAPALAAGNCVVLKPSEITPLTALKLAELAKD---IFPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHAASSIK 241          

HSP 2 Score: 51.2174 bits (121), Expect = 2.496e-17
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 1
Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A  D I  +   F ++A  A  L+          LE   S + ++P+ G+   I PWNYP
Sbjct:   54 EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPL-GVVASIAPWNYP 151          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 3.238e-17
Identity = 35/96 (36.46%), Postives = 51/96 (53.12%), Query Frame = 3
Query:  312 IDYSMELSLY*WPHGKWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAA 599
            I ++  L ++ W   K  PAL  G   ++KP+E   ++ L +   +KE G   P  + + P + P AGA + SH  +DKIAFTGS   G  I  AA
Sbjct:  184 IPWNFPLLMFTW---KIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFP-PGVVNILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAA 275          

HSP 2 Score: 47.7506 bits (112), Expect = 3.238e-17
Identity = 30/110 (27.27%), Postives = 58/110 (52.73%), Query Frame = 1
Query:   13 LSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVW-DIDDVAGCFEYYADLAEGLDAKQKAPVSLPLE-NFKSYVLKEPIWGLFGLITPWNYP 336
            L+ + G  W     + R + L  +A  +   ++ LA +E+++ GKP  +A + D+  V     YYA  A+ +       +++P++ ++ ++   EPI G+ G I PWN+P
Sbjct:   86 LAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHG-----MTIPVDGDYFTFTRHEPI-GVCGQIIPWNFP 189          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 3.238e-17
Identity = 35/96 (36.46%), Postives = 51/96 (53.12%), Query Frame = 3
Query:  312 IDYSMELSLY*WPHGKWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAA 599
            I ++  L ++ W   K  PAL  G   ++KP+E   ++ L +   +KE G   P  + + P + P AGA + SH  +DKIAFTGS   G  I  AA
Sbjct:  184 IPWNFPLLMFTW---KIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFP-PGVVNILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAA 275          

HSP 2 Score: 47.7506 bits (112), Expect = 3.238e-17
Identity = 30/110 (27.27%), Postives = 58/110 (52.73%), Query Frame = 1
Query:   13 LSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVW-DIDDVAGCFEYYADLAEGLDAKQKAPVSLPLE-NFKSYVLKEPIWGLFGLITPWNYP 336
            L+ + G  W     + R + L  +A  +   ++ LA +E+++ GKP  +A + D+  V     YYA  A+ +       +++P++ ++ ++   EPI G+ G I PWN+P
Sbjct:   86 LAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHG-----MTIPVDGDYFTFTRHEPI-GVCGQIIPWNFP 189          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ALDH2_YEAST (Aldehyde dehydrogenase [NAD(P)+] 1 OS=Saccharomyces cerevisiae GN=ALD2 PE=1 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 4.211e-17
Identity = 36/101 (35.64%), Postives = 48/101 (47.52%), Query Frame = 1
Query:   37 WSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPL-EEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            WS  S   R  YL  +   I E +  LA LET+D GKP    A  D+  +     Y+A  A+  D     P++    N  +Y LK P +G+   I PWNYP
Sbjct:   75 WSKTSSEQRGIYLSNLLKLIEEEQDTLAALETLDAGKPYHSNAKGDLAQILQLTRYFAGSADKFDKGATIPLTF---NKFAYTLKVP-FGVVAQIVPWNYP 171          

HSP 2 Score: 51.9878 bits (123), Expect = 4.211e-17
Identity = 32/96 (33.33%), Postives = 51/96 (53.12%), Query Frame = 3
Query:  312 IDYSMELSLY*WPHGKWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAA 599
            + ++  L++  W   K   ALAAG   I+KP+E  S++ L  A  +K+ G   P  + + P +    G  L SH  +DKI+FTGS   G  ++ A+
Sbjct:  166 VPWNYPLAMACW---KLQGALAAGNTVIIKPAENTSLSLLYFATLIKKAGFP-PGVVNIVPGYGSLVGQALASHMDIDKISFTGSTKVGGFVLEAS 257          
The following BLAST results are available for this feature:
BLAST of CF417141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
ABDH_ECO451.477e-1742.53Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECO271.477e-1742.53Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
AL1A1_BOVIN1.917e-1737.74Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
ALDH2_LEITA1.917e-1743.96Aldehyde dehydrogenase, mitochondrial OS=Leishmani... [more]
BETB_RHOS41.919e-1742.22Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
DMPC_PSEUF2.494e-1738.242-hydroxymuconic semialdehyde dehydrogenase OS=Pse... [more]
ABDH_SHISS2.496e-1742.53Gamma-aminobutyraldehyde dehydrogenase OS=Shigella... [more]
AL1A2_RAT3.238e-1736.46Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE3.238e-1736.46Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
ALDH2_YEAST4.211e-1735.64Aldehyde dehydrogenase [NAD(P)+] 1 OS=Saccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-071 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417141 ID=CF417141; Name=CF417141; organism=Citrus sinensis; type=EST; length=634bp
GCCCGTCAAGCACTTTCTAGAAACAAAGGGAAGGATTGGTCCTCTGCATC
CGGGGCATTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTAAGATAACAG
AGAGGAAGTCTGAACTGGCAAACCTTGAAACGATTGATTGTGGGAAGCCA
CTGGAAGAAGCTGTTTGGGACATCGATGATGTTGCTGGGTGTTTTGAGTA
CTATGCAGACCTTGCTGAAGGCTTAGATGCCAAACAAAAGGCTCCTGTTT
CTCTTCCTCTGGAGAATTTCAAGAGTTATGTACTTAAGGAACCCATTTGG
GGGTTGTTTGGATTGATTACTCCATGGAATTATCCCTCTATTGATGGCCA
CATGGAAAGTGGCCTCCTGCGTTGGCAGCAGGATGCGCTGCAATATTAAA
GCCATCTGAATTGGCGTCTGTGACCTGTTTGGAGCTTGCTGAATGTGTNA
AAGAAGGTGGGTCTTCCCTCCCGGCGTTCTTAATATTGTCACCGGATTGG
GTCCCTGAAGCTGGGGCTCCTTTGGTATCCCATCCCCACGTTGACAAGAT
TGCATTTACTGGAAGCAATGCAACAGGGAGCAGGATAATGGCAGCTGCAG
CTCCGATGGTCAAGCCTGTTTCTTTGGGAGCTGG
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