CF417141 | Citrus Genome Database

Overview


Name	CF417141
Unique Name	CF417141
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	634

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_SHIDS (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ydcW PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 4.217e-17
Identity = 37/87 (42.53%), Postives = 49/87 (56.32%), Query Frame = 3

Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   +LKPSE+  +T L+LAE  K+     PA +I +        G PL  HP V  ++ TGS ATG  I++  AP +K
Sbjct:  158 KLAPALAAGNCVVLKPSEITPLTALKLAELAKD---IFPAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAPSIK 241

HSP 2 Score: 49.2914 bits (116), Expect = 4.217e-17
Identity = 33/101 (32.67%), Postives = 48/101 (47.52%), Query Frame = 1

Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNY 333
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A  D I  +   F ++A  A  L+      V   LE   S + ++P+ G+   I PWNY
Sbjct:   54 EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNG---LAVGEYLEGHTSMIRRDPL-GVVASIAPWNY 150

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: SSDH_HUMAN (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH5A1 PE=1 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 5.468e-17
Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = 3

Query:  369 ALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLIL--SPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            ALAAGC  ++KP+E    + L LAE   + G     + ++  S     E G  + + P V KI+FTGS  TG  ++  AA  VK VS+
Sbjct:  218 ALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSVKRVSM 305

HSP 2 Score: 52.7582 bits (125), Expect = 5.468e-17
Identity = 33/101 (32.67%), Postives = 55/101 (54.46%), Query Frame = 1

Query:   37 WSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYPS 339
            W   S   R+  LR     + + K +LA + T + GKPL+EA  +I   A   E++++ A  +       +  P ++ ++ VLK+PI G+  +ITPWN+PS
Sbjct:  112 WREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDI---IHTPAKDRRALVLKQPI-GVAAVITPWNFPS 208

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: SSDH_PANPA (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pan paniscus GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.108e-17
Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = 3

Query:  369 ALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLIL--SPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            ALAAGC  ++KP+E    + L LAE   + G     + ++  S     E G  + + P V KI+FTGS  TG  ++  AA  VK VS+
Sbjct:  218 ALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSVKRVSM 305

HSP 2 Score: 52.373 bits (124), Expect = 7.108e-17
Identity = 33/101 (32.67%), Postives = 55/101 (54.46%), Query Frame = 1

Query:   37 WSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYPS 339
            W   S   R+  LR     + + K +LA + T + GKPL+EA  +I   A   E++++ A  +       +  P ++ ++ VLK+PI G+  +ITPWN+PS
Sbjct:  112 WREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDI---IYTPAKDRRALVLKQPI-GVAAVITPWNFPS 208

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: SSDH_HYLLA (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Hylobates lar GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.108e-17
Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = 3

Query:  369 ALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLIL--SPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            ALAAGC  ++KP+E    + L LAE   + G     + ++  S     E G  + + P V KI+FTGS  TG  ++  AA  VK VS+
Sbjct:  218 ALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSVKRVSM 305

HSP 2 Score: 52.373 bits (124), Expect = 7.108e-17
Identity = 33/101 (32.67%), Postives = 55/101 (54.46%), Query Frame = 1

Query:   37 WSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYPS 339
            W   S   R+  LR     + + K +LA + T + GKPL+EA  +I   A   E++++ A  +       +  P ++ ++ VLK+PI G+  +ITPWN+PS
Sbjct:  112 WREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDI---IYTPAKDRRALVLKQPI-GVAAVITPWNFPS 208

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: SSDH_GORGO (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Gorilla gorilla gorilla GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.108e-17
Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = 3

Query:  369 ALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLIL--SPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            ALAAGC  ++KP+E    + L LAE   + G     + ++  S     E G  + + P V KI+FTGS  TG  ++  AA  VK VS+
Sbjct:  218 ALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSVKRVSM 305

HSP 2 Score: 52.373 bits (124), Expect = 7.108e-17
Identity = 33/101 (32.67%), Postives = 55/101 (54.46%), Query Frame = 1

Query:   37 WSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYPS 339
            W   S   R+  LR     + + K +LA + T + GKPL+EA  +I   A   E++++ A  +       +  P ++ ++ VLK+PI G+  +ITPWN+PS
Sbjct:  112 WREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDI---IYTPAKDRRALVLKQPI-GVAAVITPWNFPS 208

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: YF19_SCHPO (Putative aldehyde dehydrogenase-like protein C9E9.09c OS=Schizosaccharomyces pombe GN=SPAC9E9.09c PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 7.117e-17
Identity = 35/100 (35.00%), Postives = 49/100 (49.00%), Query Frame = 1

Query:   37 WSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            W   S A R + L  +A  I +    LA++ET+D GK +  A  D+   A CF YY   A   D      +   ++ F +Y   EPI G+ G I PWN+P
Sbjct:   79 WRKFSSAQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWA---DKDYGQTIETDIKRF-AYTRHEPI-GVCGQIIPWNFP 173

HSP 2 Score: 51.6026 bits (122), Expect = 7.117e-17
Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 3

Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIM-AAAAPMVKPVSL 626
            K  PA+A G   ILK +EL  ++ L L + V E G       +LS D     G  + SH  +DK+AFTGS   G  +M AAA+  +K V+L
Sbjct:  180 KIAPAVACGNTIILKTAELTPLSALCLTKFVPECGFPPGVINVLSGDG-RRCGNAISSHMDIDKVAFTGSTGVGRMVMRAAASSNLKKVTL 269

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ALDH_CLAHE (Aldehyde dehydrogenase OS=Cladosporium herbarum GN=CLAH10 PE=1 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 7.120e-17
Identity = 40/106 (37.74%), Postives = 56/106 (52.83%), Query Frame = 3

Query:  312 IDYSMELSLY*WPHGKWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIM-AAAAPMVKPVSL 626
            I ++  L ++ W  G   PA+A G   +LK +E   +  L  A  VKE G   P  + +   +   AGA L SH  VDK+AFTGS   G  I+ AAA+  +K V+L
Sbjct:  161 IPWNFPLLMWAWKIG---PAIACGNTVVLKTAEQTPLGGLVAASLVKEAGFP-PGVINVISGFGKVAGAALSSHMDVDKVAFTGSTVVGRTILKAAASSNLKKVTL 262

HSP 2 Score: 52.373 bits (124), Expect = 7.120e-17
Identity = 34/100 (34.00%), Postives = 48/100 (48.00%), Query Frame = 1

Query:   37 WSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            W   +   R K L  +A    +    LA +E++D GK +  A  DI    GC  YY   A+ +  K    +    + F +YV KEPI G+ G I PWN+P
Sbjct:   72 WRQETPENRGKLLNNLANLFEKNIDLLAAVESLDNGKAISMAKGDISMCVGCLRYYGGWADKITGK---VIDTTPDTF-NYVKKEPI-GVCGQIIPWNFP 166

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_ECOLI (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain K12) GN=ydcW PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 7.127e-17
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 3

Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   +LKPSE+  +T L+LAE  K+     PA +I +        G PL  HP V  ++ TGS ATG  I++  A  +K
Sbjct:  158 KLAPALAAGNCVVLKPSEITPLTALKLAELAKD---IFPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIK 241

HSP 2 Score: 51.2174 bits (121), Expect = 7.127e-17
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 1

Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A  D I  +   F ++A  A  L+          LE   S + ++P+ G+   I PWNYP
Sbjct:   54 EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPL-GVVASIAPWNYP 151

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_ECOLC (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ydcW PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 7.127e-17
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 3

Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   +LKPSE+  +T L+LAE  K+     PA +I +        G PL  HP V  ++ TGS ATG  I++  A  +K
Sbjct:  158 KLAPALAAGNCVVLKPSEITPLTALKLAELAKD---IFPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIK 241

HSP 2 Score: 51.2174 bits (121), Expect = 7.127e-17
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 1

Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A  D I  +   F ++A  A  L+          LE   S + ++P+ G+   I PWNYP
Sbjct:   54 EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPL-GVVASIAPWNYP 151

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_ECOHS (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=ydcW PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 7.127e-17
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 3

Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   +LKPSE+  +T L+LAE  K+     PA +I +        G PL  HP V  ++ TGS ATG  I++  A  +K
Sbjct:  158 KLAPALAAGNCVVLKPSEITPLTALKLAELAKD---IFPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIK 241

HSP 2 Score: 51.2174 bits (121), Expect = 7.127e-17
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 1

Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A  D I  +   F ++A  A  L+          LE   S + ++P+ G+   I PWNYP
Sbjct:   54 EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPL-GVVASIAPWNYP 151

The following BLAST results are available for this feature:

BLAST of CF417141 vs. ExPASy Swiss-Prot

BLAST of CF417141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231


Match Name	E-value	Identity	Description
ABDH_SHIDS	4.217e-17	42.53	Gamma-aminobutyraldehyde dehydrogenase OS=Shigella...	[more]
SSDH_HUMAN	5.468e-17	37.50	Succinate-semialdehyde dehydrogenase, mitochondria...	[more]
SSDH_PANPA	7.108e-17	37.50	Succinate-semialdehyde dehydrogenase, mitochondria...	[more]
SSDH_HYLLA	7.108e-17	37.50	Succinate-semialdehyde dehydrogenase, mitochondria...	[more]
SSDH_GORGO	7.108e-17	37.50	Succinate-semialdehyde dehydrogenase, mitochondria...	[more]
YF19_SCHPO	7.117e-17	35.00	Putative aldehyde dehydrogenase-like protein C9E9....	[more]
ALDH_CLAHE	7.120e-17	37.74	Aldehyde dehydrogenase OS=Cladosporium herbarum GN...	[more]
ABDH_ECOLI	7.127e-17	41.38	Gamma-aminobutyraldehyde dehydrogenase OS=Escheric...	[more]
ABDH_ECOLC	7.127e-17	41.38	Gamma-aminobutyraldehyde dehydrogenase OS=Escheric...	[more]
ABDH_ECOHS	7.127e-17	41.38	Gamma-aminobutyraldehyde dehydrogenase OS=Escheric...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-071 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_G12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417141 ID=CF417141; Name=CF417141; organism=Citrus sinensis; type=EST; length=634bp
GCCCGTCAAGCACTTTCTAGAAACAAAGGGAAGGATTGGTCCTCTGCATC
CGGGGCATTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTAAGATAACAG
AGAGGAAGTCTGAACTGGCAAACCTTGAAACGATTGATTGTGGGAAGCCA
CTGGAAGAAGCTGTTTGGGACATCGATGATGTTGCTGGGTGTTTTGAGTA
CTATGCAGACCTTGCTGAAGGCTTAGATGCCAAACAAAAGGCTCCTGTTT
CTCTTCCTCTGGAGAATTTCAAGAGTTATGTACTTAAGGAACCCATTTGG
GGGTTGTTTGGATTGATTACTCCATGGAATTATCCCTCTATTGATGGCCA
CATGGAAAGTGGCCTCCTGCGTTGGCAGCAGGATGCGCTGCAATATTAAA
GCCATCTGAATTGGCGTCTGTGACCTGTTTGGAGCTTGCTGAATGTGTNA
AAGAAGGTGGGTCTTCCCTCCCGGCGTTCTTAATATTGTCACCGGATTGG
GTCCCTGAAGCTGGGGCTCCTTTGGTATCCCATCCCCACGTTGACAAGAT
TGCATTTACTGGAAGCAATGCAACAGGGAGCAGGATAATGGCAGCTGCAG
CTCCGATGGTCAAGCCTGTTTCTTTGGGAGCTGG