CF417141 | Citrus Genome Database

Overview


Name	CF417141
Unique Name	CF417141
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	634

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_ECODH (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=ydcW PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 7.127e-17
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 3

Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   +LKPSE+  +T L+LAE  K+     PA +I +        G PL  HP V  ++ TGS ATG  I++  A  +K
Sbjct:  158 KLAPALAAGNCVVLKPSEITPLTALKLAELAKD---IFPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIK 241

HSP 2 Score: 51.2174 bits (121), Expect = 7.127e-17
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 1

Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A  D I  +   F ++A  A  L+          LE   S + ++P+ G+   I PWNYP
Sbjct:   54 EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPL-GVVASIAPWNYP 151

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_ECOBW (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=ydcW PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 7.127e-17
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 3

Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   +LKPSE+  +T L+LAE  K+     PA +I +        G PL  HP V  ++ TGS ATG  I++  A  +K
Sbjct:  158 KLAPALAAGNCVVLKPSEITPLTALKLAELAKD---IFPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIK 241

HSP 2 Score: 51.2174 bits (121), Expect = 7.127e-17
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 1

Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A  D I  +   F ++A  A  L+          LE   S + ++P+ G+   I PWNYP
Sbjct:   54 EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPL-GVVASIAPWNYP 151

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_SHIFL (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella flexneri GN=ydcW PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 9.264e-17
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 3

Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   +LKPSE+  +T L+LAE  K+     PA +I +        G PL  HP V  ++ TGS ATG  I++  A  +K
Sbjct:  158 KLAPALAAGNCVVLKPSEITPLTALKLAELAKD---IFPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIK 241

HSP 2 Score: 50.8322 bits (120), Expect = 9.264e-17
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 1

Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A  D I  +   F ++A  A  L+          LE   S + ++P+ G+   I PWNYP
Sbjct:   54 EWGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPL-GVVASIAPWNYP 151

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_SHIF8 (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=ydcW PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 9.264e-17
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 3

Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   +LKPSE+  +T L+LAE  K+     PA +I +        G PL  HP V  ++ TGS ATG  I++  A  +K
Sbjct:  158 KLAPALAAGNCVVLKPSEITPLTALKLAELAKD---IFPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIK 241

HSP 2 Score: 50.8322 bits (120), Expect = 9.264e-17
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 1

Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A  D I  +   F ++A  A  L+          LE   S + ++P+ G+   I PWNYP
Sbjct:   54 EWGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPL-GVVASIAPWNYP 151

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_ECOSE (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain SE11) GN=ydcW PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 9.264e-17
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 3

Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   +LKPSE+  +T L+LAE  K+     PA +I +        G PL  HP V  ++ TGS ATG  I++  A  +K
Sbjct:  158 KLAPALAAGNCVVLKPSEITPLTALKLAELAKD---IFPAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIK 241

HSP 2 Score: 51.2174 bits (121), Expect = 9.264e-17
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 1

Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A  D I  +   F ++A  A  L+          LE   S + ++P+ G+   I PWNYP
Sbjct:   54 EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPL-GVVASIAPWNYP 151

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_ECO8A (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=ydcW PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 9.264e-17
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 3

Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   +LKPSE+  +T L+LAE  K+     PA +I +        G PL  HP V  ++ TGS ATG  I++  A  +K
Sbjct:  158 KLAPALAAGNCVVLKPSEITPLTALKLAELAKD---IFPAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIK 241

HSP 2 Score: 51.2174 bits (121), Expect = 9.264e-17
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 1

Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A  D I  +   F ++A  A  L+          LE   S + ++P+ G+   I PWNYP
Sbjct:   54 EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPL-GVVASIAPWNYP 151

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_ECO24 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 9.264e-17
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 3

Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   +LKPSE+  +T L+LAE  K+     PA +I +        G PL  HP V  ++ TGS ATG  I++  A  +K
Sbjct:  158 KLAPALAAGNCVVLKPSEITPLTALKLAELAKD---IFPAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIK 241

HSP 2 Score: 51.2174 bits (121), Expect = 9.264e-17
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 1

Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A  D I  +   F ++A  A  L+          LE   S + ++P+ G+   I PWNYP
Sbjct:   54 EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPL-GVVASIAPWNYP 151

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: SSDH_PONPY (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pongo pygmaeus GN=ALDH5A1 PE=2 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 1.201e-16
Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = 3

Query:  369 ALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLIL--SPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            ALAAGC  ++KP+E    + L LAE   + G     + ++  S     E G  + + P V KI+FTGS  TG  ++  AA  VK VS+
Sbjct:  218 ALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSVKRVSM 305

HSP 2 Score: 51.6026 bits (122), Expect = 1.201e-16
Identity = 33/101 (32.67%), Postives = 54/101 (53.47%), Query Frame = 1

Query:   37 WSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYPS 339
            W   S   R+  LR     +   K +LA + T + GKPL+EA  +I   A   E++++ A  +       +  P ++ ++ VLK+PI G+  +ITPWN+PS
Sbjct:  112 WREVSAKERSSLLRKWYXLMIXNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDI---IYTPAKDRRALVLKQPI-GVAAVITPWNFPS 208

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ALDH3_YEAST (Aldehyde dehydrogenase [NAD(P)+] 2 OS=Saccharomyces cerevisiae GN=ALD3 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.202e-16
Identity = 35/101 (34.65%), Postives = 48/101 (47.52%), Query Frame = 1

Query:   37 WSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPL-EEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            WS  S   R  YL  +   I E +  LA LET+D GKP    A  D+  +     YYA   +  +  +  P++    N  +Y LK P +G+   I PWNYP
Sbjct:   75 WSKTSSEQRGIYLSNLLKLIEEEQDTLAALETLDAGKPFHSNAKQDLAQIIELTRYYAGAVDKFNMGETIPLTF---NKFAYTLKVP-FGVVAQIVPWNYP 171

HSP 2 Score: 50.447 bits (119), Expect = 1.202e-16
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 3

Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAA 599
            K   ALAAG   I+KP+E  S++ L  A  +K+ G   P  + + P +    G  L +H  +DKI+FTGS   G  ++ A+
Sbjct:  178 KMQGALAAGNTVIIKPAENTSLSLLYFATLIKKAGFP-PGVVNVIPGYGSVVGKALGTHMDIDKISFTGSTKVGGSVLEAS 257

[Close]

BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: ABDH_CITK8 (Gamma-aminobutyraldehyde dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=CKO_01478 PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.204e-16
Identity = 34/86 (39.53%), Postives = 45/86 (52.33%), Query Frame = 3

Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVK 614
            K  PALAAG   ++KPSE+  +T L+LAE  K+     P  L +        G PL  H  V  ++ TGS ATG  I+   AP +K
Sbjct:  158 KLAPALAAGNCVVIKPSEITPLTALKLAEFAKD--IFPPGVLNVLFGRGKTVGDPLTGHEKVRMVSLTGSIATGEHIIQHTAPSIK 241

HSP 2 Score: 51.9878 bits (123), Expect = 1.204e-16
Identity = 33/102 (32.35%), Postives = 49/102 (48.04%), Query Frame = 1

Query:   34 DWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWD-IDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            +W   +   RA+ L  +A  I E     A LE+ +CGKPL  A+ D I  +   F ++A  A  L+          LE   S + ++P+ G+   I PWNYP
Sbjct:   54 EWGQTTPKARAELLLTLADVIEENAQTFAELESQNCGKPLHCALNDEIPAIVDVFRFFAGAARCLNGLAAGEY---LEGHTSMIRRDPV-GVVASIAPWNYP 151

The following BLAST results are available for this feature:

BLAST of CF417141 vs. ExPASy Swiss-Prot

BLAST of CF417141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231


Match Name	E-value	Identity	Description
ABDH_ECODH	7.127e-17	41.38	Gamma-aminobutyraldehyde dehydrogenase OS=Escheric...	[more]
ABDH_ECOBW	7.127e-17	41.38	Gamma-aminobutyraldehyde dehydrogenase OS=Escheric...	[more]
ABDH_SHIFL	9.264e-17	41.38	Gamma-aminobutyraldehyde dehydrogenase OS=Shigella...	[more]
ABDH_SHIF8	9.264e-17	41.38	Gamma-aminobutyraldehyde dehydrogenase OS=Shigella...	[more]
ABDH_ECOSE	9.264e-17	41.38	Gamma-aminobutyraldehyde dehydrogenase OS=Escheric...	[more]
ABDH_ECO8A	9.264e-17	41.38	Gamma-aminobutyraldehyde dehydrogenase OS=Escheric...	[more]
ABDH_ECO24	9.264e-17	41.38	Gamma-aminobutyraldehyde dehydrogenase OS=Escheric...	[more]
SSDH_PONPY	1.201e-16	37.50	Succinate-semialdehyde dehydrogenase, mitochondria...	[more]
ALDH3_YEAST	1.202e-16	34.65	Aldehyde dehydrogenase [NAD(P)+] 2 OS=Saccharomyce...	[more]
ABDH_CITK8	1.204e-16	39.53	Gamma-aminobutyraldehyde dehydrogenase OS=Citrobac...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-071 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_G12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417141 ID=CF417141; Name=CF417141; organism=Citrus sinensis; type=EST; length=634bp
GCCCGTCAAGCACTTTCTAGAAACAAAGGGAAGGATTGGTCCTCTGCATC
CGGGGCATTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTAAGATAACAG
AGAGGAAGTCTGAACTGGCAAACCTTGAAACGATTGATTGTGGGAAGCCA
CTGGAAGAAGCTGTTTGGGACATCGATGATGTTGCTGGGTGTTTTGAGTA
CTATGCAGACCTTGCTGAAGGCTTAGATGCCAAACAAAAGGCTCCTGTTT
CTCTTCCTCTGGAGAATTTCAAGAGTTATGTACTTAAGGAACCCATTTGG
GGGTTGTTTGGATTGATTACTCCATGGAATTATCCCTCTATTGATGGCCA
CATGGAAAGTGGCCTCCTGCGTTGGCAGCAGGATGCGCTGCAATATTAAA
GCCATCTGAATTGGCGTCTGTGACCTGTTTGGAGCTTGCTGAATGTGTNA
AAGAAGGTGGGTCTTCCCTCCCGGCGTTCTTAATATTGTCACCGGATTGG
GTCCCTGAAGCTGGGGCTCCTTTGGTATCCCATCCCCACGTTGACAAGAT
TGCATTTACTGGAAGCAATGCAACAGGGAGCAGGATAATGGCAGCTGCAG
CTCCGATGGTCAAGCCTGTTTCTTTGGGAGCTGG