CF417142

Overview
NameCF417142
Unique NameCF417142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3300 contig Csv1_Contig3300:248..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 3
Query:   57 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 326
            ++CG V   LAPCI YLRS GP+PV CCNGV++L  +A TT DR+TAC CL  A+ SI  +N   A GLP  CGV+IPYKIS ST+C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVACCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.169e-24
Identity = 56/110 (50.91%), Postives = 75/110 (68.18%), Query Frame = 3
Query:    6 SALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP---CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 326
            + +V+ +L+  P +A A+TCGQV   LAPCI+Y  + G +  P   CC+GVR+LN+AA TT DRQT C CLKQ   ++  L P+   G+P  CGV+IPY IS STDCS+V
Sbjct:   12 AVMVVALLLAAP-AASAVTCGQVVSMLAPCIMY--ATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.292e-23
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = 3
Query:    9 ALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLR-SGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            A+V  ML+    +  AI+CGQV+ +L+PCI Y R +G   PV CC+GV+ L  AA++T D+Q AC C+K AAG    LN   A G+P  CGVS+PY IS S DCSK+R
Sbjct:   13 AMVAAMLIVA--TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.204e-23
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = 3
Query:    3 VSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPV-PCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 326
            ++A ++ ML   P +A A+ CGQV   + PC+ Y++ GGP P   CCNGVR L+  A+++ DRQT CNCLK  A  I NLN NNA  +P  C V++PY IS   DCS++
Sbjct:    9 MAAALVLMLTAAPRAAVALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.204e-23
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = 3
Query:    9 ALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLR-SGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            A+V  ML+    +  AI+CGQV+ +L+PCI Y R +G   PV CC+GV+ L  AA++T D+Q AC C+K AAG    LN   A G+P  CGVS+PY IS S DCSK+R
Sbjct:   13 AMVAAMLLVA--TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.878e-23
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 3
Query:   12 LVLCMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSI-PNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            +++CMLVT P++++A I+CG VTGSL  C  YL  GG IP  CC+GV+ LN+ ARTT DRQ AC C++ AA ++   LN   A  LP AC V I Y IS  T+C+ VR
Sbjct:   11 VIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.878e-23
Identity = 57/112 (50.89%), Postives = 72/112 (64.29%), Query Frame = 3
Query:    6 SALVLCMLVTGPL---SAQAITCGQVTGSLAPCIVYLR-SGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            S LVL  LV   L   +  AI+CGQV+ +L+PCI Y R +G   P  CC+GV+ L  AA++T D+Q AC C+K AAG    LN   A G+P  CGVS+PY IS S DCSK+R
Sbjct:    7 SQLVLVALVAAMLLVAADAAISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 8.375e-23
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 3
Query:   57 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 326
            ++CG V   +A CI YLR  GP+P  CCNGV++L  +A TT DR+TAC CL  A+ +I  +N   A GLP  CGVSIPYKIS ST+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAACCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.375e-23
Identity = 53/107 (49.53%), Postives = 72/107 (67.29%), Query Frame = 3
Query:    9 ALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLR-SGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 326
            A+V  ML+    +  AI+CGQV+ +L+PCI Y R +G   PV CC+GV+ L  AA++T D+Q AC CLK  A SI  +N     G+P  CGVS+P+ IS+STDC+KV
Sbjct:   13 AMVAAMLLVA--TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.866e-22
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 3
Query:    3 VSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 326
            ++ L++  +     +   I CG VT +LA C+ YL + GP+P  CC GV+SL   A+TTPDR+  C CLK A   I  LN +    LP  CGVSIPY IS ST+C  +
Sbjct:    8 ITCLIVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
The following BLAST results are available for this feature:
BLAST of CF417142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP5_VITSX8.947e-2558.89Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP4_ORYSJ1.169e-2450.91Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLT42_HORVU1.292e-2350.93Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTP1_HORVU2.204e-2347.71Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLT43_HORVU2.204e-2350.93Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLTP5_ARATH2.878e-2351.85Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLT41_HORVU2.878e-2350.89Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTP3_VITSX8.375e-2354.44Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP3_HORVU8.375e-2349.53Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTPC_ARATH1.866e-2244.44Non-specific lipid-transfer protein 12 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-072 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417142 ID=CF417142; Name=CF417142; organism=Citrus sinensis; type=EST; length=569bp
TTGTTTCAGCTTTGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCT
CAGGCCATAACATGTGGGCAGGTGACTGGCTCATTGGCACCATGCATCGT
TTACTTGAGATCGGGCGGCCCTATACCTGTGCCATGCTGCAACGGCGTCA
GGTCTCTCAACGCTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGC
AACTGCTTGAAGCAAGCCGCCGGATCAATCCCTAACCTCAACCCTAATAA
TGCTGTTGGTCTTCCACGAGCTTGTGGAGTCAGCATTCCTTACAAGATCA
GCATCTCCACTGACTGCTCTAAGGTCCGGTGAACAGGAATCTGGGCTGTT
GATTTTCATATTTAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGA
CATTTTTGTGTCCGAATTATGAGTCTCTCTCTACACTTTGTACTGCGAGT
CTCGTTCCCGCCCTCGTTTCATGTTGTGTCTTATTGTCTTTGCTTTTCAT
GTCATCGTCAGTTTGTGTCTATTCTGNTTATTAAATGAAATCTTGCCTTG
TGTTCAAAAAAAAAAAAAA
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