CF417142

Overview
NameCF417142
Unique NameCF417142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.384e-17
Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 3
Query:   54 AITCGQVTGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            A+TC  VT +L PC+ YL+  G  P P  CC GVRSL AAA+T  DR+ ACNC+K AA    +LN   A  L   CGV + Y +S + +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.384e-17
Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 3
Query:   54 AITCGQVTGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            A+TC  VT +L PC+ YL+  G  P P  CC GVRSL AAA+T  DR+ ACNC+K AA    +LN   A  L   CGV + Y +S + +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.968e-17
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 3
Query:   15 VLCMLVTGPLSAQ---AITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 326
            +L M+V   L      AITC  VTG+L PC+ YLRSGG     CC G + L  A RT  DR+TAC C K AA  +  + P+ A  LP  CG+S    I+ + +C+ +
Sbjct:   10 ILAMIVMAQLMVHPSVAITCNDVTGNLTPCLPYLRSGGKPTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQL-KVRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.394e-15
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 3
Query:   57 ITCGQVTGSLAPCIVYLRSGGPIP-VPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 326
            + CGQV  SLA CI +L  G   P   CC GV++L   A T+ DR+ AC C+K AA   P +  + A  LP+ CGV I   IS +T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.442e-14
Identity = 41/95 (43.16%), Postives = 54/95 (56.84%), Query Frame = 3
Query:   45 SAQAITCGQVTGSLAPCIVYLRSG-GPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 326
            S  AI+C  V   L PC+ YL SG G  P  CC+GV+SL AA  T+ D++ AC C+K  A S+  + P  A  L   CG S+P   S + DC+ V
Sbjct:   22 SESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSV-TVKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.286e-12
Identity = 43/111 (38.74%), Postives = 57/111 (51.35%), Query Frame = 3
Query:    3 VSALVLCMLVTGPLSAQ-AITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVS-IPYKISISTDCSKV 326
            V  +V  M V G +  + AI+C QV  ++ PC  YL      P   CC  +R L++  + TPDRQ  CNCLK  A S   +    A  LP  C V+ +   IS + DCSKV
Sbjct:   13 VGLVVTMMNVWGAVPVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSY-GVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.899e-12
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 3
Query:   57 ITCGQVTGSLAPCIVYLRSGGPIP-VPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 326
            + CGQV  +L+ C+ +L      P + CC GV  L   A T  D++ AC C+K AA   PN+  + A  LP  CGV I   IS +T+C ++
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
The following BLAST results are available for this feature:
BLAST of CF417142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_AMACA1.384e-1746.81Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP1.384e-1746.81Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP1_HELAN8.968e-1742.06Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPA_RICCO8.394e-1542.86Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP8_ARATH2.442e-1443.16Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTP_PINTA2.286e-1238.74Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPB_RICCO3.899e-1238.46Non-specific lipid-transfer protein B OS=Ricinus c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-072 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417142 ID=CF417142; Name=CF417142; organism=Citrus sinensis; type=EST; length=569bp
TTGTTTCAGCTTTGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCT
CAGGCCATAACATGTGGGCAGGTGACTGGCTCATTGGCACCATGCATCGT
TTACTTGAGATCGGGCGGCCCTATACCTGTGCCATGCTGCAACGGCGTCA
GGTCTCTCAACGCTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGC
AACTGCTTGAAGCAAGCCGCCGGATCAATCCCTAACCTCAACCCTAATAA
TGCTGTTGGTCTTCCACGAGCTTGTGGAGTCAGCATTCCTTACAAGATCA
GCATCTCCACTGACTGCTCTAAGGTCCGGTGAACAGGAATCTGGGCTGTT
GATTTTCATATTTAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGA
CATTTTTGTGTCCGAATTATGAGTCTCTCTCTACACTTTGTACTGCGAGT
CTCGTTCCCGCCCTCGTTTCATGTTGTGTCTTATTGTCTTTGCTTTTCAT
GTCATCGTCAGTTTGTGTCTATTCTGNTTATTAAATGAAATCTTGCCTTG
TGTTCAAAAAAAAAAAAAA
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