CF417143 | Citrus Genome Database

Overview


Name	CF417143
Unique Name	CF417143
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	617

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig10990	contig	Csv1_Contig10990:727..1338.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 2.591e-60
Identity = 111/133 (83.46%), Postives = 115/133 (86.47%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  RV     G LGEV DPLYP GSFDP+
Sbjct:   71 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVA---GGPLGEVVDPLYPGGSFDPL 198

HSP 2 Score: 32.7278 bits (73), Expect = 2.591e-60
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLA+DPEAFAELK
Sbjct:  197 PLGLAEDPEAFAELK 211

HSP 3 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 71/183 (38.80%), Postives = 92/183 (50.27%), Query Frame = 1

Query:    4 ALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            ALSS F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  +   W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYR+AGGP
Sbjct:    7 ALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWACQVVLMGAVEGYRVAGGP 181

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.378e-60
Identity = 107/129 (82.95%), Postives = 112/129 (86.82%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L    +    +  G LGEV DPLYP GSFDP+
Sbjct:   70 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVL-MGAVEGYRIAGGPLGEVVDPLYPGGSFDPL 197

HSP 2 Score: 32.7278 bits (73), Expect = 3.378e-60
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLA+DPEAFAELK
Sbjct:  196 PLGLAEDPEAFAELK 210

HSP 3 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 72/183 (39.34%), Postives = 90/183 (49.18%), Query Frame = 1

Query:    1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MALSS SF G+AV L+PS +E+S  GRI+MRK  +KS  S SPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  +   W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYRIAGGP
Sbjct:    6 MALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWACQVVLMGAVEGYRIAGGP 180

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.378e-60
Identity = 110/133 (82.71%), Postives = 114/133 (85.71%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  RV     G LGEV DPLYP GSFDP+
Sbjct:   71 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVA---GGPLGEVIDPLYPGGSFDPL 198

HSP 2 Score: 34.2686 bits (77), Expect = 3.378e-60
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEAFAELK
Sbjct:  197 PLGLADDPEAFAELK 211

HSP 3 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 71/182 (39.01%), Postives = 93/182 (51.10%), Query Frame = 1

Query:   10 SSSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPD----PRSEHLGHLGFARWS----WMGAVEGYRIAGGP 525
            SSSF GKAVN+ PS ++++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  +   W  L GAL                     +  + +  E   D    P   H   +  A W+     MGAVEGYR+AGGP
Sbjct:   10 SSSFAGKAVNV-PSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHCRWAML-GALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSI-LAIWACQVVLMGAVEGYRVAGGP 181

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 3.379e-60
Identity = 108/134 (80.60%), Postives = 114/134 (85.07%), Query Frame = 2

Query:  176 PQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            P +  TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA+   L    +    +  G LGEV DPLYP GSFDP+
Sbjct:   61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVL-MGAVEGYRIAGGPLGEVVDPLYPGGSFDPL 193

HSP 2 Score: 34.2686 bits (77), Expect = 3.379e-60
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEAFAELK
Sbjct:  192 PLGLADDPEAFAELK 206

HSP 3 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 64/185 (34.59%), Postives = 83/185 (44.86%), Query Frame = 1

Query:    1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MALSS +  GKA        ++   GRI+MRK+ +K    +SGSPWYG DRV YLGP SGEPPSYL    P      + W  +    L  +P T +   ++  + S W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYRIAGGP
Sbjct:    6 MALSSPALAGKAAA------KVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-IHAQSILAIWAVQVVLMGAVEGYRIAGGP 176

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.743e-60
Identity = 107/134 (79.85%), Postives = 114/134 (85.07%), Query Frame = 2

Query:  176 PQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            P +  TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA+   L    +    +  G LGEV DPLYP G+FDP+
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVL-MGAVEGYRIAGGPLGEVVDPLYPGGAFDPL 197

HSP 2 Score: 34.6538 bits (78), Expect = 5.743e-60
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3

Query:  564 ALIPLGLADDPEAFAELK 617
            A  PLGLADDPEAFAELK
Sbjct:  193 AFDPLGLADDPEAFAELK 210

HSP 3 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 67/186 (36.02%), Postives = 85/186 (45.70%), Query Frame = 1

Query:    1 MALSSSFVGKAVNLAPS-GNELSNGGRISMRKTGSK---SVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MALSS  + +A   APS  + L    RI+MRKT +K   + SSGSPWYG DRV YLGP SGEPPSYL    P      + W  +    L  +P T +   ++  + S W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYRIAGGP
Sbjct:    6 MALSSPVMARA---APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-IHAQSILAIWAVQVVLMGAVEGYRIAGGP 180

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.744e-60
Identity = 110/138 (79.71%), Postives = 117/138 (84.78%), Query Frame = 2

Query:  176 PQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            P +  TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA    L G +  E  R+     G LGEVTDP+YP GSFDP+
Sbjct:   63 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAV--EGYRIA---GGPLGEVTDPIYPGGSFDPL 195

HSP 2 Score: 34.2686 bits (77), Expect = 5.744e-60
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEAFAELK
Sbjct:  194 PLGLADDPEAFAELK 208

HSP 3 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 79/193 (40.93%), Postives = 94/193 (48.70%), Query Frame = 1

Query:    1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGPPR*SD*PIVP 555
            MALSS S  GKAV L PS  E+   GR+SMRKT +K VSSGSPWYGPDRVKYLGPFSGEPPSYL    P      + W  +    L  +P T +   ++  + S W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYRIAGGP      PI P
Sbjct:    7 MALSSPSLAGKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-IHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYP 188

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.488e-60
Identity = 110/133 (82.71%), Postives = 114/133 (85.71%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTA LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  RV     G LGEV DPLYP GSFDP+
Sbjct:   72 TGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVA---GGPLGEVVDPLYPGGSFDPL 199

HSP 2 Score: 34.2686 bits (77), Expect = 7.488e-60
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEAFAELK
Sbjct:  198 PLGLADDPEAFAELK 212

HSP 3 Score: 96.6709 bits (239), Expect = 1.012e-19
Identity = 71/185 (38.38%), Postives = 92/185 (49.73%), Query Frame = 1

Query:    1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MALSS SF GKAV  +PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  +   W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYR+AGGP
Sbjct:    6 MALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPG----DYGWDTA---ELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWACQVVLMGAVEGYRVAGGP 182

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.492e-60
Identity = 106/134 (79.10%), Postives = 114/134 (85.07%), Query Frame = 2

Query:  176 PQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            P +  TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L    +    +  G LGEVTDP+YP GSFDP+
Sbjct:   55 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVL-MGAVEGYRIAGGPLGEVTDPIYPGGSFDPL 187

HSP 2 Score: 34.2686 bits (77), Expect = 7.492e-60
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEAFAELK
Sbjct:  186 PLGLADDPEAFAELK 200

HSP 3 Score: 99.3673 bits (246), Expect = 1.561e-20
Identity = 70/187 (37.43%), Postives = 89/187 (47.59%), Query Frame = 1

Query:   16 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGPPR*SD*PIVP 555
            +  G+AV L+P+  E+    + +MRKT SKSVSSGSPWYGPDRVKYLGPFSGEPPSYL    P      + W  +    L  +P T +   ++  + S W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYRIAGGP      PI P
Sbjct:    2 TLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYP 180

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.273e-59
Identity = 107/134 (79.85%), Postives = 113/134 (84.33%), Query Frame = 2

Query:  176 PQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            P +  TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA    L    +    +  G LGEV DPLYP GSFDP+
Sbjct:   62 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVL-MGAVEGYRIAGGPLGEVVDPLYPGGSFDPL 194

HSP 2 Score: 34.2686 bits (77), Expect = 1.273e-59
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEAFAELK
Sbjct:  193 PLGLADDPEAFAELK 207

HSP 3 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 66/185 (35.68%), Postives = 84/185 (45.41%), Query Frame = 1

Query:    1 MALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MA+SS+   G  + +   G      GRI+MRKT  K    +SGSPWYGPDRVKYLGPFSGEPPSYL    P      + W  +    L  +P T +   ++  + S W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYRIAGGP
Sbjct:    6 MAISSTAMAGTPIKVGSFGE-----GRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-IHAQSILAIWACQVVLMGAVEGYRIAGGP 177

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 2.164e-59
Identity = 110/133 (82.71%), Postives = 114/133 (85.71%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  RV       LGEV DPLYP GSFDP+
Sbjct:   71 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVA---GEPLGEVVDPLYPGGSFDPL 198

HSP 2 Score: 32.7278 bits (73), Expect = 2.164e-59
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLA+DPEAFAELK
Sbjct:  197 PLGLAEDPEAFAELK 211

HSP 3 Score: 98.2117 bits (243), Expect = 3.477e-20
Identity = 69/183 (37.70%), Postives = 91/183 (49.73%), Query Frame = 1

Query:    4 ALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            ALSS F GKAV L+PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  +   W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYR+AG P
Sbjct:    7 ALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWACQVVLMGAVEGYRVAGEP 181

The following BLAST results are available for this feature:

BLAST of CF417143 vs. ExPASy Swiss-Prot

BLAST of CF417143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65


Match Name	E-value	Identity	Description
CB21_TOBAC	2.591e-60	83.46	Chlorophyll a-b binding protein 16, chloroplastic ...	[more]
CB2B_SOLLC	3.378e-60	82.95	Chlorophyll a-b binding protein 1B, chloroplastic ...	[more]
CB24_PETSP	3.378e-60	82.71	Chlorophyll a-b binding protein 25, chloroplastic ...	[more]
CB22_ORYSJ	3.379e-60	80.60	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_ORYSJ	5.743e-60	79.85	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB23_SOYBN	5.744e-60	79.71	Chlorophyll a-b binding protein 3, chloroplastic O...	[more]
CB25_PETSP	7.488e-60	82.71	Chlorophyll a-b binding protein 91R, chloroplastic...	[more]
CB21_CUCSA	7.492e-60	79.10	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB21_MAIZE	1.273e-59	79.85	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB25_NICPL	2.164e-59	82.71	Chlorophyll a-b binding protein E, chloroplastic O...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-073 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H4 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417143 ID=CF417143; Name=CF417143; organism=Citrus sinensis; type=EST; length=617bp
ATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTC
AGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGA
GCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAG
TACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGGACTGGTGAGT
TCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAA
ACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCAT
GTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAG
TCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGC
GAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAG
CATCTTGGCCATCTGGGCTTTGCCAGGTGGTCTTGGATGGGAGCCGTTGA
GGGTTACAGAATTGCTGGAGGGCCGCCTCGGTGAAGTGACTGACCCATTG
TACCCANGTGGCAGCTTTGATCCCATTGGGTTTGGCTGATGACCCGGAGG
CTTTTGCTGAGCTCAAG