CF417143 | Citrus Genome Database

Overview


Name	CF417143
Unique Name	CF417143
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	617

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig10990	contig	Csv1_Contig10990:727..1338.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.821e-59
Identity = 109/133 (81.95%), Postives = 113/133 (84.96%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFP DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNG+KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  RV     G LGEV DPLYP GSFDP+
Sbjct:   72 TGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVA---GGPLGEVIDPLYPGGSFDPL 199

HSP 2 Score: 32.7278 bits (73), Expect = 2.821e-59
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLA+DPEAFAELK
Sbjct:  198 PLGLAEDPEAFAELK 212

HSP 3 Score: 93.5893 bits (231), Expect = 8.565e-19
Identity = 73/186 (39.25%), Postives = 94/186 (50.54%), Query Frame = 1

Query:    1 MALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPD----PRSEHLGHLGFARWS----WMGAVEGYRIAGGP 525
            MALSSS F GKAV L+ S +E++  G+++MRKT +K+   SS SPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  +   W  L GAL                     +  A +  E   D    P   H   +  A W+     MGAVEGYR+AGGP
Sbjct:    6 MALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFP----SDYGWDTA---GLSADPETFAKNRELEVIHCRWAML-GALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSI-LAIWACQVVLMGAVEGYRVAGGP 182

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 3.677e-59
Identity = 110/138 (79.71%), Postives = 116/138 (84.06%), Query Frame = 2

Query:  176 PQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            P +  TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWA    L G +  E  RV     G LGEVTDP+YP G+FDP+
Sbjct:   78 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAI--EGYRVA---GGPLGEVTDPIYPGGNFDPL 210

HSP 2 Score: 33.113 bits (74), Expect = 3.677e-59
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDP+AFAELK
Sbjct:  209 PLGLADDPDAFAELK 223

HSP 3 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 67/190 (35.26%), Postives = 88/190 (46.32%), Query Frame = 1

Query:   37 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPD----PRSEHLGHLGFARWS----WMGAVEGYRIAGGPPR*SD*PIVP 555
            ++ P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYL    P      + W  +    L  +P T +   ++  + S W  L GAL                     +  A +  E   D    P+  H   +  A W+     MGA+EGYR+AGGP      PI P
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHSRWAML-GALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSI-LAIWACQVILMGAIEGYRVAGGPLGEVTDPIYP 203

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.679e-59
Identity = 111/138 (80.43%), Postives = 116/138 (84.06%), Query Frame = 2

Query:  176 PQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            P +  TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA    L G +  E  RV     G LGEV DPLYP G+FDP+
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAI--EGYRVA---GGPLGEVVDPLYPGGTFDPL 197

HSP 2 Score: 31.9574 bits (71), Expect = 3.679e-59
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEAFA++K
Sbjct:  196 PLGLADDPEAFADVK 210

HSP 3 Score: 84.3445 bits (207), Expect = 5.196e-16
Identity = 68/186 (36.56%), Postives = 88/186 (47.31%), Query Frame = 1

Query:    1 MALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MALSS+ F GKAVN+  S   L    R++MRKT +K+    SSGSPWYGPDRV YLGP SGEPPSYL    P      + W  +    L  +P T +   ++  + S W  L       P  L                      G    LG P     ++ +  +   +   MGA+EGYR+AGGP
Sbjct:    6 MALSSTAFAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-IHAQSILAIWACQVVLMGAIEGYRVAGGP 180

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.690e-59
Identity = 105/134 (78.36%), Postives = 113/134 (84.33%), Query Frame = 2

Query:  176 PQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            P +  TGEFPGDYGWDTAGLSADPETFAKNRELEVIH  WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L    +    +  G LGEVTDP+YP GSFDP+
Sbjct:    6 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVL-MGAVEGYRIAGGPLGEVTDPIYPGGSFDPL 138

HSP 2 Score: 34.2686 bits (77), Expect = 3.690e-59
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEAFAELK
Sbjct:  137 PLGLADDPEAFAELK 151

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.796e-59
Identity = 120/183 (65.57%), Postives = 127/183 (69.40%), Query Frame = 2

Query:   89 VKPGASLFLQVARGTART-------ESSTWVHS---------LASPQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            + PGAS      R T R          S W  S            P +  TGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  RV    EG LGE  D LYP GSFDP+
Sbjct:   20 LSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV--EGYRVAG--EGPLGEAEDLLYPGGSFDPL 198

HSP 2 Score: 31.5722 bits (70), Expect = 4.796e-59
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLA DPEAFAELK
Sbjct:  197 PLGLATDPEAFAELK 211

HSP 3 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 69/184 (37.50%), Postives = 90/184 (48.91%), Query Frame = 1

Query:    1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*T--RSHPLQMGH-----VGSSWMRLPGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGPP 528
            MALSS +F GKAV L+P  +E+   GR++MRKT   +  SGSPWYG DRVKYLGPFSGEPPSYL    P      + W  +    L  +P T  R+  L++ H     +G+     P  L                      G    LG P     ++ +  +   +   MGAVEGYR+AG  P
Sbjct:    6 MALSSPAFAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPG----DYGWDTA---GLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWATQVILMGAVEGYRVAGEGP 181

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.152e-59
Identity = 107/133 (80.45%), Postives = 114/133 (85.71%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  R+     G LGEV DPLYP GSFDP+
Sbjct:   73 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV--EGYRIA---GGPLGEVVDPLYPGGSFDPL 200

HSP 2 Score: 34.2686 bits (77), Expect = 8.152e-59
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEAFAELK
Sbjct:  199 PLGLADDPEAFAELK 213

HSP 3 Score: 83.5741 bits (205), Expect = 8.864e-16
Identity = 72/187 (38.50%), Postives = 86/187 (45.99%), Query Frame = 1

Query:    1 MALSS-SFVGKAVNLA--PSGNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MALSS +  GK V  +  PS  EL  G R +MRK  T  K  SSGSPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T S   ++  + S W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYRIAGGP
Sbjct:    6 MALSSPTLTGKPVETSANPSSQELG-GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWATQVILMGAVEGYRIAGGP 183

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.152e-59
Identity = 107/133 (80.45%), Postives = 114/133 (85.71%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  R+     G LGEV DPLYP GSFDP+
Sbjct:   74 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV--EGYRIA---GGPLGEVVDPLYPGGSFDPL 201

HSP 2 Score: 34.2686 bits (77), Expect = 8.152e-59
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEAFAELK
Sbjct:  200 PLGLADDPEAFAELK 214

HSP 3 Score: 85.8853 bits (211), Expect = 1.786e-16
Identity = 71/185 (38.38%), Postives = 85/185 (45.95%), Query Frame = 1

Query:    1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MALSS +  GK + L PS  EL    R +MRK  T  K  SSGSPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T S   ++  + S W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYRIAGGP
Sbjct:    9 MALSSPTLAGKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWATQVILMGAVEGYRIAGGP 184

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.386e-58
Identity = 108/133 (81.20%), Postives = 113/133 (84.96%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFS+GGLDYLGNPSL+HAQSILAIWA    L G +  E  RV       LGEV DPLYP GSFDP+
Sbjct:   72 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVA---GEPLGEVVDPLYPGGSFDPL 199

HSP 2 Score: 32.7278 bits (73), Expect = 1.386e-58
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLA+DPEAFAELK
Sbjct:  198 PLGLAEDPEAFAELK 212

HSP 3 Score: 95.5153 bits (236), Expect = 2.254e-19
Identity = 73/186 (39.25%), Postives = 96/186 (51.61%), Query Frame = 1

Query:    1 MALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPD----PRSEHLGHLGFARWS----WMGAVEGYRIAGGP 525
            MALSSS F GKAV L+PS +E++  G+++MRKT SK+  VSS SPWYGP+RVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  +   W  L GAL                     +G + +  +   D    P   H   +  A W+     MGAVEGYR+AG P
Sbjct:    6 MALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHCRWAML-GALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSI-LAIWACQVVLMGAVEGYRVAGEP 182

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.806e-58
Identity = 110/138 (79.71%), Postives = 116/138 (84.06%), Query Frame = 2

Query:  176 PQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            P +  TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWA    L G +  E  RV     G LGEVTDP+YP G+FDP+
Sbjct:   78 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAI--EGYRVA---GGPLGEVTDPIYPGGNFDPL 210

HSP 2 Score: 30.8018 bits (68), Expect = 1.806e-58
Identity = 12/15 (80.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDP+AFA++K
Sbjct:  209 PLGLADDPDAFADVK 223

HSP 3 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 67/190 (35.26%), Postives = 88/190 (46.32%), Query Frame = 1

Query:   37 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPD----PRSEHLGHLGFARWS----WMGAVEGYRIAGGPPR*SD*PIVP 555
            ++ P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYL    P      + W  +    L  +P T +   ++  + S W  L GAL                     +  A +  E   D    P+  H   +  A W+     MGA+EGYR+AGGP      PI P
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHSRWAML-GALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSI-LAIWACQVILMGAIEGYRVAGGPLGEVTDPIYP 203

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 2.356e-58
Identity = 108/133 (81.20%), Postives = 112/133 (84.21%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVW KAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  RV     G LG V DPLYP GSFDP+
Sbjct:   72 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAV--EGYRVA---GGPLGVVVDPLYPGGSFDPL 199

HSP 2 Score: 32.7278 bits (73), Expect = 2.356e-58
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLA+DPEAFAELK
Sbjct:  198 PLGLAEDPEAFAELK 212

HSP 3 Score: 97.8265 bits (242), Expect = 4.542e-20
Identity = 74/186 (39.78%), Postives = 95/186 (51.08%), Query Frame = 1

Query:    1 MALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPD----PRSEHLGHLGFARWS----WMGAVEGYRIAGGP 525
            MALSSS F GK V L+PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  +   W  L GAL                     +  + +  E   D    P   H   +  A W+     MGAVEGYR+AGGP
Sbjct:    6 MALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHCRWAML-GALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSI-LAIWACQVLLMGAVEGYRVAGGP 182

The following BLAST results are available for this feature:

BLAST of CF417143 vs. ExPASy Swiss-Prot

BLAST of CF417143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65


Match Name	E-value	Identity	Description
CB23_PETSP	2.821e-59	81.95	Chlorophyll a-b binding protein 22R, chloroplastic...	[more]
CB2A_PINSY	3.677e-59	79.71	Chlorophyll a-b binding protein type 2 member 1A, ...	[more]
CB29_MAIZE	3.679e-59	80.43	Chlorophyll a-b binding protein M9, chloroplastic ...	[more]
CB22_CUCSA	3.690e-59	78.36	Chlorophyll a-b binding protein of LHCII type 1 (F...	[more]
CB21_SINAL	4.796e-59	65.57	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB28_PEA	8.152e-59	80.45	Chlorophyll a-b binding protein 8, chloroplastic O...	[more]
CB22_PEA	8.152e-59	80.45	Chlorophyll a-b binding protein AB80, chloroplasti...	[more]
CB23_NICPL	1.386e-58	81.20	Chlorophyll a-b binding protein C, chloroplastic O...	[more]
CB2A_PYRPY	1.806e-58	79.71	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB22_PETSP	2.356e-58	81.20	Chlorophyll a-b binding protein 22L, chloroplastic...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-073 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H4 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417143 ID=CF417143; Name=CF417143; organism=Citrus sinensis; type=EST; length=617bp
ATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTC
AGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGA
GCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAG
TACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGGACTGGTGAGT
TCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAA
ACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCAT
GTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAG
TCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGC
GAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAG
CATCTTGGCCATCTGGGCTTTGCCAGGTGGTCTTGGATGGGAGCCGTTGA
GGGTTACAGAATTGCTGGAGGGCCGCCTCGGTGAAGTGACTGACCCATTG
TACCCANGTGGCAGCTTTGATCCCATTGGGTTTGGCTGATGACCCGGAGG
CTTTTGCTGAGCTCAAG