CF417143
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 5.221e-58 Identity = 107/139 (76.98%), Postives = 116/139 (83.45%), Query Frame = 2 Query: 173 SPQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 SP + +GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWA L G + E RV G LGEV DP+YP GSFDP+ Sbjct: 64 SPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAV--EGYRVA---GGPLGEVEDPIYPGGSFDPL 197 HSP 2 Score: 34.2686 bits (77), Expect = 5.221e-58 Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLADDPEAFAELK Sbjct: 196 PLGLADDPEAFAELK 210
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 5.226e-58 Identity = 109/138 (78.99%), Postives = 115/138 (83.33%), Query Frame = 2 Query: 176 PQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 P + TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFSEGGLDYLGN SLIHAQSILAIWA L G + E R+ G LGEVTDP+YP GSFDP+ Sbjct: 45 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAV--EGYRIA---GGPLGEVTDPIYPGGSFDPL 177 HSP 2 Score: 31.9574 bits (71), Expect = 5.226e-58 Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PL LADDPEAFAELK Sbjct: 176 PLALADDPEAFAELK 190 HSP 3 Score: 90.5077 bits (223), Expect = 7.251e-18 Identity = 69/172 (40.12%), Postives = 84/172 (48.84%), Query Frame = 1 Query: 73 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLG-------FARWS----WMGAVEGYRIAGGPPR*SD*PIVP 555 GR+SMRKT SK+VSSGSPWYGPDRVKYLGPFSGEPPSYL P + W + L +P T + ++ + S W L GAL + + + E D +LG+ A W+ MGAVEGYRIAGGP PI P Sbjct: 11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHSRWAML-GALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLD----YLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYP 170
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 8.874e-58 Identity = 104/134 (77.61%), Postives = 113/134 (84.33%), Query Frame = 2 Query: 176 PQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 P + TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFS+GGLDYLGNPSL+HAQS+LAIWA L + + G LGE+ DPLYP GSFDP+ Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVL-MGAVEGYRIAGGPLGEIVDPLYPGGSFDPL 198 HSP 2 Score: 28.4906 bits (62), Expect = 8.874e-58 Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLA+ P+AFAELK Sbjct: 197 PLGLAERPQAFAELK 211 HSP 3 Score: 81.2629 bits (199), Expect = 4.399e-15 Identity = 67/181 (37.02%), Postives = 83/181 (45.86%), Query Frame = 1 Query: 10 SSSFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525 SSSF GKAV PS + L R++MRKT +K+ VSS SPWYG DRV YLGP SGEPPSYL P + W + L +P T + ++ + W L P L G LG P ++ L + + MGAVEGYRIAGGP Sbjct: 10 SSSFAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSL-VHAQSLLAIWACQVVLMGAVEGYRIAGGP 181
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 1.157e-57 Identity = 106/133 (79.70%), Postives = 111/133 (83.46%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADP TFAKNR+LEVIHCRW MLGALGCVFPEL ARNGVKFGEAVWFKAG+QIF EGGLDYLGNPSL+HAQSILAIWA L G + E RV G LGEV DPLYP GSFDP+ Sbjct: 71 TGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVA---GGPLGEVIDPLYPGGSFDPL 198 HSP 2 Score: 32.7278 bits (73), Expect = 1.157e-57 Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLADDPEAFAEL+ Sbjct: 197 PLGLADDPEAFAELE 211 HSP 3 Score: 94.3597 bits (233), Expect = 5.021e-19 Identity = 71/185 (38.38%), Postives = 94/185 (50.81%), Query Frame = 1 Query: 1 MALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525 MALSSS F GKAVN+ PS +E++ G+++MRKT +K+ VSSGSPWYGPDRVKYLGPFSGE PSYL P + W + L +P T + ++ + W L P + G LG P ++ + + + MGAVEGYR+AGGP Sbjct: 6 MALSSSSFAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPG----DYGWDTA---GLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSL-VHAQSILAIWACQVVLMGAVEGYRVAGGP 181
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 1.159e-57 Identity = 108/133 (81.20%), Postives = 114/133 (85.71%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA L G + E R+ G LGEV DPLYP GSFDP+ Sbjct: 33 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV--EGYRIA---GGPLGEVVDPLYPGGSFDPL 160 HSP 2 Score: 29.261 bits (64), Expect = 1.159e-57 Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLA+ PEAFAELK Sbjct: 159 PLGLAEVPEAFAELK 173
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 210.305 bits (534), Expect = 1.967e-57 Identity = 105/131 (80.15%), Postives = 114/131 (87.02%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GW-EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA L G+ E RV G LGE DP+YP G+FDP+ Sbjct: 70 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVG---GGPLGEGLDPIYPGGAFDPL 197 HSP 2 Score: 33.4982 bits (75), Expect = 1.967e-57 Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = 3 Query: 564 ALIPLGLADDPEAFAELK 617 A PLGLADDP+AFAELK Sbjct: 193 AFDPLGLADDPDAFAELK 210
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 3.343e-57 Identity = 108/133 (81.20%), Postives = 114/133 (85.71%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSIL+IWA L G + E RV G LGE+ DPLYP GSFDP+ Sbjct: 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAV--EGYRVA---GGPLGEIVDPLYPGGSFDPL 196 HSP 2 Score: 27.7202 bits (60), Expect = 3.343e-57 Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLA+DPE AELK Sbjct: 195 PLGLAEDPERSAELK 209 HSP 3 Score: 93.5893 bits (231), Expect = 8.565e-19 Identity = 71/183 (38.80%), Postives = 88/183 (48.09%), Query Frame = 1 Query: 1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525 MALSS + GKAV +APS +EL GR+SMRKT VS SPWYGPDRVKYLGPFSGE PSYL P + W + L +P T + ++ + S W L P L G LG P ++ + + + MGAVEGYR+AGGP Sbjct: 6 MALSSPALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGPFSGEAPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILSIWATQVILMGAVEGYRVAGGP 179
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 3.343e-57 Identity = 108/133 (81.20%), Postives = 112/133 (84.21%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFSEGGL YLGNPSL+HAQSILAIWA L G + E RV G LGEV DPLYP GSFDP+ Sbjct: 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVA---GGPLGEVVDPLYPGGSFDPL 196 HSP 2 Score: 31.187 bits (69), Expect = 3.343e-57 Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLADD EAFAELK Sbjct: 195 PLGLADDAEAFAELK 209 HSP 3 Score: 85.8853 bits (211), Expect = 1.786e-16 Identity = 67/183 (36.61%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 1 MALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525 MALSSS F GKAV S +E+ R+SMRKT + GSPWYGPDRVKYLGPFSGE PSYL P + W + L +P T + ++ + W L P L G LG P ++ + + + MGAVEGYR+AGGP Sbjct: 6 MALSSSTFAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSL-VHAQSILAIWACQVVLMGAVEGYRVAGGP 179
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.259e-56 Identity = 104/133 (78.20%), Postives = 113/133 (84.96%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA L G + E RV G LGE DPLYP G+FDP+ Sbjct: 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLI--EGYRVG---GGPLGEGLDPLYPGGAFDPL 196 HSP 2 Score: 34.6538 bits (78), Expect = 1.259e-56 Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3 Query: 564 ALIPLGLADDPEAFAELK 617 A PLGLADDPEAFAELK Sbjct: 192 AFDPLGLADDPEAFAELK 209
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 1.641e-56 Identity = 106/133 (79.70%), Postives = 112/133 (84.21%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA L G + E RV G LGE D LYP GSFDP+ Sbjct: 71 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAV--EGYRVAG--NGPLGEAEDLLYPGGSFDPL 199 HSP 2 Score: 31.5722 bits (70), Expect = 1.641e-56 Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLA DPEAFAELK Sbjct: 198 PLGLATDPEAFAELK 212 HSP 3 Score: 88.1965 bits (217), Expect = 3.599e-17 Identity = 68/185 (36.76%), Postives = 89/185 (48.11%), Query Frame = 1 Query: 1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGPP 528 MALSS +F GKAV L+P+ +E+ GR++MRKT +K SGSPWYG DRVKYLGPFSGE PSYL P + W + L +P T + ++ + S W L P L G LG P ++ + + + MGAVEGYR+AG P Sbjct: 6 MALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSL-VHAQSILAIWATQVILMGAVEGYRVAGNGP 182 The following BLAST results are available for this feature:
BLAST of CF417143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417143 ID=CF417143; Name=CF417143; organism=Citrus sinensis; type=EST; length=617bpback to top |