CF417143
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 1.641e-56 Identity = 106/133 (79.70%), Postives = 112/133 (84.21%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA L G + E RV G LGE D LYP GSFDP+ Sbjct: 71 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAV--EGYRVAG--NGPLGEAEDLLYPGGSFDPL 199 HSP 2 Score: 31.5722 bits (70), Expect = 1.641e-56 Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLA DPEAFAELK Sbjct: 198 PLGLATDPEAFAELK 212 HSP 3 Score: 90.5077 bits (223), Expect = 7.251e-18 Identity = 69/185 (37.30%), Postives = 90/185 (48.65%), Query Frame = 1 Query: 1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGPP 528 MALSS +F GKAVNL+P+ +E+ GR++MRKT +K SGSPWYG DRVKYLGPFSGE PSYL P + W + L +P T + ++ + S W L P L G LG P ++ + + + MGAVEGYR+AG P Sbjct: 6 MALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSL-VHAQSILAIWATQVILMGAVEGYRVAGNGP 182
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 2.140e-56 Identity = 102/131 (77.86%), Postives = 113/131 (86.26%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GW-EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA L G+ E RV G LGE D +YP G+FDP+ Sbjct: 70 TGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVG---GGPLGEGLDKIYPGGAFDPL 197 HSP 2 Score: 34.6538 bits (78), Expect = 2.140e-56 Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3 Query: 564 ALIPLGLADDPEAFAELK 617 A PLGLADDPEAFAELK Sbjct: 193 AFDPLGLADDPEAFAELK 210
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 2.790e-56 Identity = 102/133 (76.69%), Postives = 113/133 (84.96%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILA+WA L G + E RV G LGE D +YP G+FDP+ Sbjct: 70 TGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLI--EGYRVG---GGPLGEGLDKIYPGGAFDPL 197 HSP 2 Score: 34.6538 bits (78), Expect = 2.790e-56 Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3 Query: 564 ALIPLGLADDPEAFAELK 617 A PLGLADDPEAFAELK Sbjct: 193 AFDPLGLADDPEAFAELK 210
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 8.059e-56 Identity = 102/131 (77.86%), Postives = 112/131 (85.50%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GW-EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA L G+ E RV G LGE D +YP G+FDP+ Sbjct: 70 TGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVG---GGPLGEGLDKIYPGGAFDPL 197 HSP 2 Score: 34.6538 bits (78), Expect = 8.059e-56 Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3 Query: 564 ALIPLGLADDPEAFAELK 617 A PLGLADDPEAFAELK Sbjct: 193 AFDPLGLADDPEAFAELK 210
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.052e-55 Identity = 102/133 (76.69%), Postives = 112/133 (84.21%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA L G + E RV G LGE D +YP G+FDP+ Sbjct: 42 TGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFV--EGYRVG---GGPLGEGLDKIYPGGAFDPL 169 HSP 2 Score: 34.6538 bits (78), Expect = 1.052e-55 Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3 Query: 564 ALIPLGLADDPEAFAELK 617 A PLGLADDPEAFAELK Sbjct: 165 AFDPLGLADDPEAFAELK 182
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 3.035e-55 Identity = 103/132 (78.03%), Postives = 112/132 (84.85%), Query Frame = 2 Query: 194 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWA L G + E RV G LGEVTDP+YP GSFDP+ Sbjct: 74 GEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVA---GGPLGEVTDPIYPGGSFDPL 200 HSP 2 Score: 31.5722 bits (70), Expect = 3.035e-55 Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLADDP+ FAELK Sbjct: 199 PLGLADDPDTFAELK 213
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 5.158e-55 Identity = 103/131 (78.63%), Postives = 111/131 (84.73%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GW-EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA L G+ E RV G LGE DPLYP G+FDP+ Sbjct: 70 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVG---GGPLGEGLDPLYPGGAFDPL 197 HSP 2 Score: 32.3426 bits (72), Expect = 5.158e-55 Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = 3 Query: 564 ALIPLGLADDPEAFAELK 617 A PLGLADDP++FAELK Sbjct: 193 AFDPLGLADDPDSFAELK 210
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 6.725e-55 Identity = 102/131 (77.86%), Postives = 113/131 (86.26%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GW-EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA+ L G+ E RV G LGE D +YP G+FDP+ Sbjct: 68 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVG---GGPLGEGLDKVYPGGAFDPL 195 HSP 2 Score: 31.9574 bits (71), Expect = 6.725e-55 Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3 Query: 564 ALIPLGLADDPEAFAELK 617 A PLGLADDP+ FAELK Sbjct: 191 AFDPLGLADDPDTFAELK 208
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 6.725e-55 Identity = 102/131 (77.86%), Postives = 113/131 (86.26%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GW-EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA+ L G+ E RV G LGE D +YP G+FDP+ Sbjct: 68 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVG---GGPLGEGLDKVYPGGAFDPL 195 HSP 2 Score: 31.9574 bits (71), Expect = 6.725e-55 Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3 Query: 564 ALIPLGLADDPEAFAELK 617 A PLGLADDP+ FAELK Sbjct: 191 AFDPLGLADDPDTFAELK 208
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 208.764 bits (530), Expect = 8.796e-55 Identity = 105/133 (78.95%), Postives = 112/133 (84.21%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWA L G + E RV G LGE D LYP G+FDP+ Sbjct: 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAV--EGYRVG---GGPLGEGLDQLYPGGAFDPL 196 HSP 2 Score: 26.1794 bits (56), Expect = 8.796e-55 Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3 Query: 564 ALIPLGLADDPEAF 605 A PLGLA+DPEAF Sbjct: 192 AFDPLGLAEDPEAF 205 The following BLAST results are available for this feature:
BLAST of CF417143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417143 ID=CF417143; Name=CF417143; organism=Citrus sinensis; type=EST; length=617bpback to top |