CF417143 | Citrus Genome Database

Overview


Name	CF417143
Unique Name	CF417143
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	617

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.641e-56
Identity = 106/133 (79.70%), Postives = 112/133 (84.21%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA    L G +  E  RV     G LGE  D LYP GSFDP+
Sbjct:   71 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAV--EGYRVAG--NGPLGEAEDLLYPGGSFDPL 199

HSP 2 Score: 31.5722 bits (70), Expect = 1.641e-56
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLA DPEAFAELK
Sbjct:  198 PLGLATDPEAFAELK 212

HSP 3 Score: 90.5077 bits (223), Expect = 7.251e-18
Identity = 69/185 (37.30%), Postives = 90/185 (48.65%), Query Frame = 1

Query:    1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGPP 528
            MALSS +F GKAVNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  + S W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYR+AG  P
Sbjct:    6 MALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSL-VHAQSILAIWATQVILMGAVEGYRVAGNGP 182

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.140e-56
Identity = 102/131 (77.86%), Postives = 113/131 (86.26%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GW-EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA    L G+ E  RV     G LGE  D +YP G+FDP+
Sbjct:   70 TGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVG---GGPLGEGLDKIYPGGAFDPL 197

HSP 2 Score: 34.6538 bits (78), Expect = 2.140e-56
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3

Query:  564 ALIPLGLADDPEAFAELK 617
            A  PLGLADDPEAFAELK
Sbjct:  193 AFDPLGLADDPEAFAELK 210

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.790e-56
Identity = 102/133 (76.69%), Postives = 113/133 (84.96%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILA+WA    L G +  E  RV     G LGE  D +YP G+FDP+
Sbjct:   70 TGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLI--EGYRVG---GGPLGEGLDKIYPGGAFDPL 197

HSP 2 Score: 34.6538 bits (78), Expect = 2.790e-56
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3

Query:  564 ALIPLGLADDPEAFAELK 617
            A  PLGLADDPEAFAELK
Sbjct:  193 AFDPLGLADDPEAFAELK 210

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.059e-56
Identity = 102/131 (77.86%), Postives = 112/131 (85.50%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GW-EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA    L G+ E  RV     G LGE  D +YP G+FDP+
Sbjct:   70 TGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVG---GGPLGEGLDKIYPGGAFDPL 197

HSP 2 Score: 34.6538 bits (78), Expect = 8.059e-56
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3

Query:  564 ALIPLGLADDPEAFAELK 617
            A  PLGLADDPEAFAELK
Sbjct:  193 AFDPLGLADDPEAFAELK 210

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.052e-55
Identity = 102/133 (76.69%), Postives = 112/133 (84.21%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA    L G +  E  RV     G LGE  D +YP G+FDP+
Sbjct:   42 TGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFV--EGYRVG---GGPLGEGLDKIYPGGAFDPL 169

HSP 2 Score: 34.6538 bits (78), Expect = 1.052e-55
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 3

Query:  564 ALIPLGLADDPEAFAELK 617
            A  PLGLADDPEAFAELK
Sbjct:  165 AFDPLGLADDPEAFAELK 182

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.035e-55
Identity = 103/132 (78.03%), Postives = 112/132 (84.85%), Query Frame = 2

Query:  194 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  RV     G LGEVTDP+YP GSFDP+
Sbjct:   74 GEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVA---GGPLGEVTDPIYPGGSFDPL 200

HSP 2 Score: 31.5722 bits (70), Expect = 3.035e-55
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDP+ FAELK
Sbjct:  199 PLGLADDPDTFAELK 213

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.158e-55
Identity = 103/131 (78.63%), Postives = 111/131 (84.73%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GW-EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA    L G+ E  RV     G LGE  DPLYP G+FDP+
Sbjct:   70 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVG---GGPLGEGLDPLYPGGAFDPL 197

HSP 2 Score: 32.3426 bits (72), Expect = 5.158e-55
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = 3

Query:  564 ALIPLGLADDPEAFAELK 617
            A  PLGLADDP++FAELK
Sbjct:  193 AFDPLGLADDPDSFAELK 210

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.725e-55
Identity = 102/131 (77.86%), Postives = 113/131 (86.26%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GW-EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA+   L G+ E  RV     G LGE  D +YP G+FDP+
Sbjct:   68 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVG---GGPLGEGLDKVYPGGAFDPL 195

HSP 2 Score: 31.9574 bits (71), Expect = 6.725e-55
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  564 ALIPLGLADDPEAFAELK 617
            A  PLGLADDP+ FAELK
Sbjct:  191 AFDPLGLADDPDTFAELK 208

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.725e-55
Identity = 102/131 (77.86%), Postives = 113/131 (86.26%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GW-EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA+   L G+ E  RV     G LGE  D +YP G+FDP+
Sbjct:   68 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVG---GGPLGEGLDKVYPGGAFDPL 195

HSP 2 Score: 31.9574 bits (71), Expect = 6.725e-55
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  564 ALIPLGLADDPEAFAELK 617
            A  PLGLADDP+ FAELK
Sbjct:  191 AFDPLGLADDPDTFAELK 208

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 8.796e-55
Identity = 105/133 (78.95%), Postives = 112/133 (84.21%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWA    L G +  E  RV     G LGE  D LYP G+FDP+
Sbjct:   69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAV--EGYRVG---GGPLGEGLDQLYPGGAFDPL 196

HSP 2 Score: 26.1794 bits (56), Expect = 8.796e-55
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 ALIPLGLADDPEAF 605
            A  PLGLA+DPEAF
Sbjct:  192 AFDPLGLAEDPEAF 205

The following BLAST results are available for this feature:

BLAST of CF417143 vs. ExPASy Swiss-Prot

BLAST of CF417143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65


Match Name	E-value	Identity	Description
CB21_ARATH	1.641e-56	79.70	Chlorophyll a-b binding protein 165/180, chloropla...	[more]
CB24_SOLLC	2.140e-56	77.86	Chlorophyll a-b binding protein 4, chloroplastic O...	[more]
CB23_TOBAC	2.790e-56	76.69	Chlorophyll a-b binding protein 36, chloroplastic ...	[more]
CB26_PETSP	8.059e-56	77.86	Chlorophyll a-b binding protein 37, chloroplastic ...	[more]
CB25_SOLLC	1.052e-55	76.69	Chlorophyll a-b binding protein 5, chloroplastic (...	[more]
CB2_PHYPA	3.035e-55	78.03	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB215_PEA	5.158e-55	78.63	Chlorophyll a-b binding protein 215, chloroplastic...	[more]
CB23_ORYSJ	6.725e-55	77.86	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_ORYSI	6.725e-55	77.86	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_SILPR	8.796e-55	78.95	Chlorophyll a-b binding protein, chloroplastic (Fr...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-073 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H4 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417143 ID=CF417143; Name=CF417143; organism=Citrus sinensis; type=EST; length=617bp
ATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTC
AGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGA
GCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAG
TACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGGACTGGTGAGT
TCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAA
ACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCAT
GTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAG
TCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGC
GAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAG
CATCTTGGCCATCTGGGCTTTGCCAGGTGGTCTTGGATGGGAGCCGTTGA
GGGTTACAGAATTGCTGGAGGGCCGCCTCGGTGAAGTGACTGACCCATTG
TACCCANGTGGCAGCTTTGATCCCATTGGGTTTGGCTGATGACCCGGAGG
CTTTTGCTGAGCTCAAG