CF417143

Overview
NameCF417143
Unique NameCF417143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10990 contig Csv1_Contig10990:727..1338. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.801e-53
Identity = 99/133 (74.44%), Postives = 105/133 (78.95%), Query Frame = 2
Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW     L G +  E  R+     G LGEVTDPLYP GSFD +
Sbjct:   74 TGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAV--EGYRIA---RGPLGEVTDPLYP-GSFDSL 200          

HSP 2 Score: 37.7354 bits (86), Expect = 3.801e-53
Identity = 25/56 (44.64%), Postives = 29/56 (51.79%), Query Frame = 1
Query:   22 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYL 189
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYL
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYL 73          

HSP 3 Score: 26.9498 bits (58), Expect = 3.801e-53
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  576 LGLADDPEAFAELK 617
            LGLA+D EAFAELK
Sbjct:  200 LGLAEDTEAFAELK 213          
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.167e-51
Identity = 92/132 (69.70%), Postives = 101/132 (76.52%), Query Frame = 2
Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGW--EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A+   L    E  RV     G  GE  DPLYP  SFDP+
Sbjct:   60 TGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVN---GGPAGEGLDPLYPGESFDPL 188          

HSP 2 Score: 43.1282 bits (100), Expect = 1.167e-51
Identity = 17/26 (65.38%), Postives = 20/26 (76.92%), Query Frame = 1
Query:  112 SSGSPWYGPDRVKYLGPFSGEPPSYL 189
            S+G  WYGPDR K+LGPFS   P+YL
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYL 59          

HSP 3 Score: 31.5722 bits (70), Expect = 1.167e-51
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  573 PLGLADDPEAFAELK 617
            PLGLADDP+ FAELK
Sbjct:  187 PLGLADDPDTFAELK 201          
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.349e-51
Identity = 91/137 (66.42%), Postives = 105/137 (76.64%), Query Frame = 2
Query:  194 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEG-------RLGEVTDPLYPXGS-FDPI 577
            GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+      LG++ L +  L+EG        +GE  D LYP G  FDP+
Sbjct:   72 GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAV------LGFQVL-LMGLVEGFRINGLDGVGEGND-LYPGGQYFDPL 200          

HSP 2 Score: 48.1358 bits (113), Expect = 4.349e-51
Identity = 26/64 (40.62%), Postives = 35/64 (54.69%), Query Frame = 1
Query:    4 ALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSP-WYGPDRVKYLGPFSGEPPSYLD 192
            A S + V K   L+  G   S      +    +  ++ G+  WYGPDRVKYLGPFS + PSYL+
Sbjct:    8 AASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLN 71          

HSP 3 Score: 30.0314 bits (66), Expect = 4.349e-51
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  573 PLGLADDPEAFAELK 617
            PLGLADDP  FAELK
Sbjct:  199 PLGLADDPVTFAELK 213          
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.527e-51
Identity = 100/134 (74.63%), Postives = 108/134 (80.60%), Query Frame = 2
Query:  188 WTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            ++GE P     +  GLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA    L G +  E  R+     G LGEVTDP+YP GSFDP+
Sbjct:   60 FSGEAPSYLTGEFHGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAV--EGYRIA---GGPLGEVTDPIYPGGSFDPL 188          

HSP 2 Score: 31.9574 bits (71), Expect = 5.527e-51
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEA AELK
Sbjct:  187 PLGLADDPEALAELK 201          

HSP 3 Score: 95.5153 bits (236), Expect = 2.254e-19
Identity = 76/193 (39.38%), Postives = 90/193 (46.63%), Query Frame = 1
Query:    1 MALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGPPR*SD*PIVP 555
            MALSSS   G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYGPDRVKYLGPFSGE PSYL                     L  +P T +   ++  + S W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYRIAGGP      PI P
Sbjct:    6 MALSSSSLAGQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEF---------------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-IHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYP 181          
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.870e-50
Identity = 88/137 (64.23%), Postives = 103/137 (75.18%), Query Frame = 2
Query:  194 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEG-------RLGEVTDPLYPXGS-FDPI 577
            GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+      LG++ + +  L+EG        +GE  D LYP G  FDP+
Sbjct:   69 GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAV------LGFQVV-LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPL 197          

HSP 2 Score: 48.9062 bits (115), Expect = 7.870e-50
Identity = 24/61 (39.34%), Postives = 35/61 (57.38%), Query Frame = 1
Query:   10 SSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLD 192
            ++ F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGPFS + PSYL+
Sbjct:   16 ATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLN 68          

HSP 3 Score: 30.4166 bits (67), Expect = 7.870e-50
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  573 PLGLADDPEAFAELK 617
            PLGLADDP  FAELK
Sbjct:  196 PLGLADDPTTFAELK 210          
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.444e-48
Identity = 94/131 (71.76%), Postives = 103/131 (78.63%), Query Frame = 2
Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGW--EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A+   L    E  RV     G  GE  DPLYP  SFDP+
Sbjct:   58 TGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVN---GGPAGEGLDPLYPGESFDPL 185          

HSP 2 Score: 31.5722 bits (70), Expect = 1.444e-48
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  573 PLGLADDPEAFAELK 617
            PLGLADDP+ FAELK
Sbjct:  184 PLGLADDPDTFAELK 198          
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.568e-46
Identity = 86/133 (64.66%), Postives = 103/133 (77.44%), Query Frame = 2
Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSI---LAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI   LA+  +  GL  E  R     EG L ++ D LYP G FDP+
Sbjct:   55 TGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLA-EAYRANGGSEGFLDDL-DTLYPGGPFDPL 185          

HSP 2 Score: 33.113 bits (74), Expect = 3.568e-46
Identity = 14/22 (63.64%), Postives = 17/22 (77.27%), Query Frame = 1
Query:  127 WYGPDRVKYLGPFS-GEPPSYL 189
            +YGPDR K+LGPFS  + P YL
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYL 54          

HSP 3 Score: 31.5722 bits (70), Expect = 3.568e-46
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  573 PLGLADDPEAFAELK 617
            PLGLADDP+ FAELK
Sbjct:  184 PLGLADDPDTFAELK 198          
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.620e-41
Identity = 95/181 (52.49%), Postives = 115/181 (63.54%), Query Frame = 2
Query:   86 CVKPGASLFLQVARGT-ARTESSTWVHSLASPQAT--W----------TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGW--EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            C + G        +G  A ++SS+  +    P AT  W          TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+ A+WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A+   L    E  RV     G  GE  DPLYP  +FDP+
Sbjct:   29 CSEQGGRAGKSTKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVN---GGPAGEGLDPLYPGEAFDPL 206          

HSP 2 Score: 31.9574 bits (71), Expect = 5.620e-41
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  564 ALIPLGLADDPEAFAELK 617
            A  PLGLADDP+ FAELK
Sbjct:  202 AFDPLGLADDPDTFAELK 219          
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.645e-26
Identity = 61/87 (70.11%), Postives = 66/87 (75.86%), Query Frame = 2
Query:  329 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA    L G +  E  RV     G LGE  DPLYP  +FDP+
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLI--EGYRVG---GGPLGEGLDPLYPGDAFDPL 82          

HSP 2 Score: 31.187 bits (69), Expect = 1.645e-26
Identity = 15/18 (83.33%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  564 ALIPLGLADDPEAFAELK 617
            A  PLGLADDPEA AELK
Sbjct:   78 AFDPLGLADDPEAKAELK 95          
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.669e-20
Identity = 57/130 (43.85%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  194 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG-NPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G N  +    +++A   L GG   E  R+T  L     +  D L+P G FDP+
Sbjct:   87 GEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGA--EYYRITNGL-----DFEDKLHPGGPFDPL 209          

HSP 2 Score: 23.0978 bits (48), Expect = 1.669e-20
Identity = 11/15 (73.33%), Postives = 11/15 (73.33%), Query Frame = 3
Query:  573 PLGLADDPEAFAELK 617
            PLGLA DPE  A LK
Sbjct:  208 PLGLAKDPEQGALLK 222          

HSP 3 Score: 22.7126 bits (47), Expect = 1.669e-20
Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  100 SKSVSSGSP----WYGPDRVKYL 156
            SK+VS  S     WYGPDR  +L
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFL 71          
The following BLAST results are available for this feature:
BLAST of CF417143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB2_MALDO3.801e-5374.44Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLMO1.167e-5169.70Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU4.349e-5166.42Chlorophyll a-b binding protein of LHCII type III,... [more]
CB22_SOYBN5.527e-5174.63Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_SOLLC7.870e-5064.23Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_CHLRE1.444e-4871.76Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE3.568e-4664.66Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA5.620e-4152.49Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY1.645e-2670.11Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH1.669e-2043.85Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-073 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417143 ID=CF417143; Name=CF417143; organism=Citrus sinensis; type=EST; length=617bp
ATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTC
AGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGA
GCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAG
TACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGGACTGGTGAGT
TCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAA
ACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCAT
GTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAG
TCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGC
GAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAG
CATCTTGGCCATCTGGGCTTTGCCAGGTGGTCTTGGATGGGAGCCGTTGA
GGGTTACAGAATTGCTGGAGGGCCGCCTCGGTGAAGTGACTGACCCATTG
TACCCANGTGGCAGCTTTGATCCCATTGGGTTTGGCTGATGACCCGGAGG
CTTTTGCTGAGCTCAAG
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