CF417143
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 3.801e-53 Identity = 99/133 (74.44%), Postives = 105/133 (78.95%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM ALGC+FPELL+ G FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW L G + E R+ G LGEVTDPLYP GSFD + Sbjct: 74 TGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAV--EGYRIA---RGPLGEVTDPLYP-GSFDSL 200 HSP 2 Score: 37.7354 bits (86), Expect = 3.801e-53 Identity = 25/56 (44.64%), Postives = 29/56 (51.79%), Query Frame = 1 Query: 22 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYL 189 + K L P + L +M K +KS S S RVKYLGPFSGE PSYL Sbjct: 20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYL 73 HSP 3 Score: 26.9498 bits (58), Expect = 3.801e-53 Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 3 Query: 576 LGLADDPEAFAELK 617 LGLA+D EAFAELK Sbjct: 200 LGLAEDTEAFAELK 213
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 1.167e-51 Identity = 92/132 (69.70%), Postives = 101/132 (76.52%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGW--EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+ GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A A+ L E RV G GE DPLYP SFDP+ Sbjct: 60 TGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVN---GGPAGEGLDPLYPGESFDPL 188 HSP 2 Score: 43.1282 bits (100), Expect = 1.167e-51 Identity = 17/26 (65.38%), Postives = 20/26 (76.92%), Query Frame = 1 Query: 112 SSGSPWYGPDRVKYLGPFSGEPPSYL 189 S+G WYGPDR K+LGPFS P+YL Sbjct: 34 SAGIEWYGPDRAKWLGPFSTNTPAYL 59 HSP 3 Score: 31.5722 bits (70), Expect = 1.167e-51 Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLADDP+ FAELK Sbjct: 187 PLGLADDPDTFAELK 201
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 4.349e-51 Identity = 91/137 (66.42%), Postives = 105/137 (76.64%), Query Frame = 2 Query: 194 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEG-------RLGEVTDPLYPXGS-FDPI 577 GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L + GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ LG++ L + L+EG +GE D LYP G FDP+ Sbjct: 72 GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAV------LGFQVL-LMGLVEGFRINGLDGVGEGND-LYPGGQYFDPL 200 HSP 2 Score: 48.1358 bits (113), Expect = 4.349e-51 Identity = 26/64 (40.62%), Postives = 35/64 (54.69%), Query Frame = 1 Query: 4 ALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSP-WYGPDRVKYLGPFSGEPPSYLD 192 A S + V K L+ G S + + ++ G+ WYGPDRVKYLGPFS + PSYL+ Sbjct: 8 AASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLN 71 HSP 3 Score: 30.0314 bits (66), Expect = 4.349e-51 Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLADDP FAELK Sbjct: 199 PLGLADDPVTFAELK 213
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 5.527e-51 Identity = 100/134 (74.63%), Postives = 108/134 (80.60%), Query Frame = 2 Query: 188 WTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 ++GE P + GLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA L G + E R+ G LGEVTDP+YP GSFDP+ Sbjct: 60 FSGEAPSYLTGEFHGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAV--EGYRIA---GGPLGEVTDPIYPGGSFDPL 188 HSP 2 Score: 31.9574 bits (71), Expect = 5.527e-51 Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLADDPEA AELK Sbjct: 187 PLGLADDPEALAELK 201 HSP 3 Score: 95.5153 bits (236), Expect = 2.254e-19 Identity = 76/193 (39.38%), Postives = 90/193 (46.63%), Query Frame = 1 Query: 1 MALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGPPR*SD*PIVP 555 MALSSS G+A+ LAPS EL G R+SMRKT K+VSSGSPWYGPDRVKYLGPFSGE PSYL L +P T + ++ + S W L P L G LG P ++ + + + MGAVEGYRIAGGP PI P Sbjct: 6 MALSSSSLAGQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEF---------------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-IHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYP 181
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 7.870e-50 Identity = 88/137 (64.23%), Postives = 103/137 (75.18%), Query Frame = 2 Query: 194 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEG-------RLGEVTDPLYPXGS-FDPI 577 GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L + V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+ LG++ + + L+EG +GE D LYP G FDP+ Sbjct: 69 GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAV------LGFQVV-LMGLVEGFRINGLPGVGEGND-LYPGGQYFDPL 197 HSP 2 Score: 48.9062 bits (115), Expect = 7.870e-50 Identity = 24/61 (39.34%), Postives = 35/61 (57.38%), Query Frame = 1 Query: 10 SSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLD 192 ++ F+G+ N P + ++ G ++ S WYGPDRVKYLGPFS + PSYL+ Sbjct: 16 ATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLN 68 HSP 3 Score: 30.4166 bits (67), Expect = 7.870e-50 Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLADDP FAELK Sbjct: 196 PLGLADDPTTFAELK 210
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.444e-48 Identity = 94/131 (71.76%), Postives = 103/131 (78.63%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGW--EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A A+ L E RV G GE DPLYP SFDP+ Sbjct: 58 TGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVN---GGPAGEGLDPLYPGESFDPL 185 HSP 2 Score: 31.5722 bits (70), Expect = 1.444e-48 Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLADDP+ FAELK Sbjct: 184 PLGLADDPDTFAELK 198
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 3.568e-46 Identity = 86/133 (64.66%), Postives = 103/133 (77.44%), Query Frame = 2 Query: 191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSI---LAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 TGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++ GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI LA+ + GL E R EG L ++ D LYP G FDP+ Sbjct: 55 TGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLA-EAYRANGGSEGFLDDL-DTLYPGGPFDPL 185 HSP 2 Score: 33.113 bits (74), Expect = 3.568e-46 Identity = 14/22 (63.64%), Postives = 17/22 (77.27%), Query Frame = 1 Query: 127 WYGPDRVKYLGPFS-GEPPSYL 189 +YGPDR K+LGPFS + P YL Sbjct: 33 FYGPDRAKFLGPFSENDTPEYL 54 HSP 3 Score: 31.5722 bits (70), Expect = 3.568e-46 Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLADDP+ FAELK Sbjct: 184 PLGLADDPDTFAELK 198
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 5.620e-41 Identity = 95/181 (52.49%), Postives = 115/181 (63.54%), Query Frame = 2 Query: 86 CVKPGASLFLQVARGT-ARTESSTWVHSLASPQAT--W----------TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGW--EPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 C + G +G A ++SS+ + P AT W TGEFPGDYGWDTAGLSADPETF + RELE+IH R +LGALG V PELLA +G+KFG+ A+WFKAGA IF +GGL+YLGNPSLIHAQ+I+A A+ L E RV G GE DPLYP +FDP+ Sbjct: 29 CSEQGGRAGKSTKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVN---GGPAGEGLDPLYPGEAFDPL 206 HSP 2 Score: 31.9574 bits (71), Expect = 5.620e-41 Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 3 Query: 564 ALIPLGLADDPEAFAELK 617 A PLGLADDP+ FAELK Sbjct: 202 AFDPLGLADDPDTFAELK 219
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.645e-26 Identity = 61/87 (70.11%), Postives = 66/87 (75.86%), Query Frame = 2 Query: 329 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA L G + E RV G LGE DPLYP +FDP+ Sbjct: 1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLI--EGYRVG---GGPLGEGLDPLYPGDAFDPL 82 HSP 2 Score: 31.187 bits (69), Expect = 1.645e-26 Identity = 15/18 (83.33%), Postives = 15/18 (83.33%), Query Frame = 3 Query: 564 ALIPLGLADDPEAFAELK 617 A PLGLADDPEA AELK Sbjct: 78 AFDPLGLADDPEAKAELK 95
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.669e-20 Identity = 57/130 (43.85%), Postives = 72/130 (55.38%), Query Frame = 2 Query: 194 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG-NPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 GE GDYG+D GL PE FAK + E+IH RWAMLGA G + PE L + G G EAVWFK GA + L+Y G N + +++A L GG E R+T L + D L+P G FDP+ Sbjct: 87 GEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGA--EYYRITNGL-----DFEDKLHPGGPFDPL 209 HSP 2 Score: 23.0978 bits (48), Expect = 1.669e-20 Identity = 11/15 (73.33%), Postives = 11/15 (73.33%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PLGLA DPE A LK Sbjct: 208 PLGLAKDPEQGALLK 222 HSP 3 Score: 22.7126 bits (47), Expect = 1.669e-20 Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 1 Query: 100 SKSVSSGSP----WYGPDRVKYL 156 SK+VS S WYGPDR +L Sbjct: 49 SKAVSETSDELAKWYGPDRRIFL 71 The following BLAST results are available for this feature:
BLAST of CF417143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417143 ID=CF417143; Name=CF417143; organism=Citrus sinensis; type=EST; length=617bpback to top |