CF417143

Overview
NameCF417143
Unique NameCF417143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10990 contig Csv1_Contig10990:727..1338. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 50/146 (34.25%), Postives = 73/146 (50.00%), Query Frame = 2
Query:  170 ASPQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA---------LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGS-FDPI 577
            ++P     G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA          PG +  +P+     L G     TD  YP G  FDP+
Sbjct:   72 STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG-----TDVGYPGGLWFDPL 205          
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 56/177 (31.64%), Postives = 79/177 (44.63%), Query Frame = 2
Query:   80 SPCVKPGASLFLQVARGTARTESSTWVHSLASPQATWT-GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA---------LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGS-FDPI 577
            S  + P  S  + V+   A  +   W      P+  W  G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA          PG +  +P+     L G     TD  YP G  FDP+
Sbjct:   43 SKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPE--WLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG-----TDVGYPGGLWFDPL 205          
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.275e-12
Identity = 55/151 (36.42%), Postives = 68/151 (45.03%), Query Frame = 2
Query:  140 TESSTWVHSLASPQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWA-LPGGLGWEPLRVTELLEGRLGEVTDP---LYPXGSFDPI 577
            T S+ W      P A   G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP           W  LP  L  E L +    + R  E  DP    YP G+FDP+
Sbjct:   43 TMSAEWFPGQPRP-AHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP---------VPWGNLPTILAIEFLAIAFAEQQRTME-KDPEKKKYPGGAFDPL 175          

HSP 2 Score: 23.0978 bits (48), Expect = 2.275e-12
Identity = 10/18 (55.56%), Postives = 11/18 (61.11%), Query Frame = 3
Query:  564 ALIPLGLADDPEAFAELK 617
            A  PLG + DP  F ELK
Sbjct:  171 AFDPLGFSKDPAKFEELK 188          
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 51/136 (37.50%), Postives = 68/136 (50.00%), Query Frame = 2
Query:  170 ASPQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            A P A  TGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +    GL  LG  ++  A +    W   GG  W+        +G L    D  YP   FDP+
Sbjct:  194 AEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV---DGLK-LGFITMAIA-APTEYWRGQGGFNWQ--------KGEL----DRSYP--GFDPL 303          

HSP 2 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 52/152 (34.21%), Postives = 68/152 (44.74%), Query Frame = 2
Query:  122 ARGTARTESSTWVHSLASPQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            A   A+ E   W  ++  P+   TGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL  NG  F   +W K     F+   L  +         + L  W   GG  W              E  D  YP   FDP+
Sbjct:  363 ASSGAKEERELWFPNIVPPRYL-TGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG-NGAWF--QIWDKVDFNRFAVVALQVV---------APLEYWRGNGGFLWND-----------EETVDQSYP--GFDPL 488          
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.508e-11
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 2
Query:  410 LDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            LDYLGNPSL+HAQSILAIWA    L G +  E  RV    +G LGE  D LYP GSFDP+
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAV--EGYRVAG--DGPLGEAEDLLYPGGSFDPL 56          

HSP 2 Score: 25.0238 bits (53), Expect = 5.508e-11
Identity = 11/15 (73.33%), Postives = 11/15 (73.33%), Query Frame = 3
Query:  573 PLGLADDPEAFAELK 617
            PL    DPEAFAELK
Sbjct:   55 PLASLTDPEAFAELK 69          
The following BLAST results are available for this feature:
BLAST of CF417143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB12_SOLLC3.368e-1534.25Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY8.296e-1431.64Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB121_HORVU2.275e-1236.42Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
LH18_EUGGR7.765e-1237.50Light-harvesting complex I LH38 proteins (Fragment... [more]
CB21_RAPSA5.508e-1161.67Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-073 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417143 ID=CF417143; Name=CF417143; organism=Citrus sinensis; type=EST; length=617bp
ATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTC
AGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGA
GCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAG
TACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGGACTGGTGAGT
TCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAA
ACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCAT
GTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAG
TCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGC
GAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAG
CATCTTGGCCATCTGGGCTTTGCCAGGTGGTCTTGGATGGGAGCCGTTGA
GGGTTACAGAATTGCTGGAGGGCCGCCTCGGTGAAGTGACTGACCCATTG
TACCCANGTGGCAGCTTTGATCCCATTGGGTTTGGCTGATGACCCGGAGG
CTTTTGCTGAGCTCAAG
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