CF417143
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15 Identity = 50/146 (34.25%), Postives = 73/146 (50.00%), Query Frame = 2 Query: 170 ASPQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA---------LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGS-FDPI 577 ++P G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q + + +L + +L WA PG + +P+ L G TD YP G FDP+ Sbjct: 72 STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG-----TDVGYPGGLWFDPL 205
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14 Identity = 56/177 (31.64%), Postives = 79/177 (44.63%), Query Frame = 2 Query: 80 SPCVKPGASLFLQVARGTARTESSTWVHSLASPQATWT-GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA---------LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGS-FDPI 577 S + P S + V+ A + W P+ W G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q + + +L + +L WA PG + +P+ L G TD YP G FDP+ Sbjct: 43 SKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPE--WLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG-----TDVGYPGGLWFDPL 205
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.275e-12 Identity = 55/151 (36.42%), Postives = 68/151 (45.03%), Query Frame = 2 Query: 140 TESSTWVHSLASPQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWA-LPGGLGWEPLRVTELLEGRLGEVTDP---LYPXGSFDPI 577 T S+ W P A G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP W LP L E L + + R E DP YP G+FDP+ Sbjct: 43 TMSAEWFPGQPRP-AHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP---------VPWGNLPTILAIEFLAIAFAEQQRTME-KDPEKKKYPGGAFDPL 175 HSP 2 Score: 23.0978 bits (48), Expect = 2.275e-12 Identity = 10/18 (55.56%), Postives = 11/18 (61.11%), Query Frame = 3 Query: 564 ALIPLGLADDPEAFAELK 617 A PLG + DP F ELK Sbjct: 171 AFDPLGFSKDPAKFEELK 188
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12 Identity = 51/136 (37.50%), Postives = 68/136 (50.00%), Query Frame = 2 Query: 170 ASPQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 A P A TGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+AG + GL LG ++ A + W GG W+ +G L D YP FDP+ Sbjct: 194 AEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV---DGLK-LGFITMAIA-APTEYWRGQGGFNWQ--------KGEL----DRSYP--GFDPL 303 HSP 2 Score: 70.0922 bits (170), Expect = 1.014e-11 Identity = 52/152 (34.21%), Postives = 68/152 (44.74%), Query Frame = 2 Query: 122 ARGTARTESSTWVHSLASPQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 A A+ E W ++ P+ TGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL NG F +W K F+ L + + L W GG W E D YP FDP+ Sbjct: 363 ASSGAKEERELWFPNIVPPRYL-TGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG-NGAWF--QIWDKVDFNRFAVVALQVV---------APLEYWRGNGGFLWND-----------EETVDQSYP--GFDPL 488
BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 5.508e-11 Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 2 Query: 410 LDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577 LDYLGNPSL+HAQSILAIWA L G + E RV +G LGE D LYP GSFDP+ Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAV--EGYRVAG--DGPLGEAEDLLYPGGSFDPL 56 HSP 2 Score: 25.0238 bits (53), Expect = 5.508e-11 Identity = 11/15 (73.33%), Postives = 11/15 (73.33%), Query Frame = 3 Query: 573 PLGLADDPEAFAELK 617 PL DPEAFAELK Sbjct: 55 PLASLTDPEAFAELK 69 The following BLAST results are available for this feature:
BLAST of CF417143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417143 ID=CF417143; Name=CF417143; organism=Citrus sinensis; type=EST; length=617bpback to top |