CF417144
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 4.881e-95 Identity = 135/160 (84.38%), Postives = 142/160 (88.75%), Query Frame = 2 Query: 2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSK--SVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 TMALSS S GKAV L P+ +E+ GRI+MRKT K +V S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA Sbjct: 5 TMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 164 HSP 2 Score: 92.4337 bits (228), Expect = 4.881e-95 Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MGAVEGYRIAGGPLG V DPLYPGGSFDPLGLADDPEAFAELKVK+ Sbjct: 170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 215
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1) HSP 1 Score: 278.485 bits (711), Expect = 6.367e-95 Identity = 134/160 (83.75%), Postives = 144/160 (90.00%), Query Frame = 2 Query: 2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 TMALSSS F GK V L+PS +E++ G+ +MRKT +K+ VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPEL ARNGVKFGEAVW AG+QIFSEGGLDYLGNPSL+HAQSILAIWA Sbjct: 5 TMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 164 HSP 2 Score: 90.5077 bits (223), Expect = 6.367e-95 Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPEAFAELKVK+ Sbjct: 170 MGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 1.414e-94 Identity = 127/151 (84.11%), Postives = 137/151 (90.73%), Query Frame = 2 Query: 20 SFVGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 + G+AV L+P+ E+ + +MRKT SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCVFPELL+RNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA Sbjct: 2 TLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 152 HSP 2 Score: 93.5893 bits (231), Expect = 1.414e-94 Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MGAVEGYRIAGGPLG VTDP+YPGGSFDPLGLADDPEAFAELKVK+ Sbjct: 158 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE 203
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 279.641 bits (714), Expect = 2.406e-94 Identity = 134/160 (83.75%), Postives = 146/160 (91.25%), Query Frame = 2 Query: 2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 TMALSSS F GKAV L+PS +E++ G+++MRKT SK+ VSS SPWYGP+RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF G+QIFS+GGLDYLGNPSL+HAQSILAIWA Sbjct: 5 TMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWA 164 HSP 2 Score: 87.4261 bits (215), Expect = 2.406e-94 Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MGAVEGYR+AG PLG V DPLYPGGSFDPLGLA+DPEAFAELKVK+ Sbjct: 170 MGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 275.404 bits (703), Expect = 2.406e-94 Identity = 134/160 (83.75%), Postives = 146/160 (91.25%), Query Frame = 2 Query: 2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 TMA+SSS F GKAVN+ PS ++++ G+ +MRKT +K+ VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPEL ARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA Sbjct: 5 TMAISSSSFAGKAVNV-PSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 163 HSP 2 Score: 91.6633 bits (226), Expect = 2.406e-94 Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLADDPEAFAELKVK+ Sbjct: 169 MGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKE 214
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 1.547e-93 Identity = 132/160 (82.50%), Postives = 143/160 (89.38%), Query Frame = 2 Query: 2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 TMALSSS F GKAV L+ S +E++ G+++MRKT +K+ SS SPWYGPDRVKYLGPFSGE PSYLTGEFP DYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPEL ARNG+KFGEAVWF AGAQIFSEGGLDYLGNPSL+HAQSILAIWA Sbjct: 5 TMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWA 164 HSP 2 Score: 90.1225 bits (222), Expect = 1.547e-93 Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPEAFAELKVK+ Sbjct: 170 MGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKE 215
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 271.937 bits (694), Expect = 7.627e-93 Identity = 132/160 (82.50%), Postives = 144/160 (90.00%), Query Frame = 2 Query: 2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 TMALSSS F GKAVN+ PS +E++ G+++MRKT +K+ VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEV HCRW MLGALGCVFPEL ARNGVKFGEAVWF AG+QIF EGGLDYLGNPSL+HAQSILAIWA Sbjct: 5 TMALSSSSFAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWA 163 HSP 2 Score: 90.1225 bits (222), Expect = 7.627e-93 Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLADDPEAFAEL+VK+ Sbjct: 169 MGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKE 214
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 265.388 bits (677), Expect = 4.113e-91 Identity = 132/161 (81.99%), Postives = 140/161 (86.96%), Query Frame = 2 Query: 2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 TMALSS+ F GKAVN+ S R++MRKT +K+ +SGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSLIHAQSILAIWA Sbjct: 5 TMALSSTAFAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 162 HSP 2 Score: 90.8929 bits (224), Expect = 4.113e-91 Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MGAVEGYRIAGGPLG V DPLYPGGSFDPLGLADDPEAF ELKVK+ Sbjct: 168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKE 213
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 5.366e-91 Identity = 132/158 (83.54%), Postives = 142/158 (89.87%), Query Frame = 2 Query: 2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 TMALSS +F GKAV L+P +E+ GR++MRKT + SGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA Sbjct: 5 TMALSSPAFAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 162 HSP 2 Score: 78.9518 bits (193), Expect = 5.366e-91 Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 1 Query: 490 MGAVEGYRIAG-GPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MGAVEGYR+AG GPLG D LYPGGSFDPLGLA DPEAFAELKVK+ Sbjct: 168 MGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKE 214
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 270.781 bits (691), Expect = 5.366e-91 Identity = 133/158 (84.18%), Postives = 140/158 (88.61%), Query Frame = 2 Query: 2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 TMALSS + GKAV +APS +EL GR+SMRKT VS SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSIL+IWA Sbjct: 5 TMALSSPALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWA 161 HSP 2 Score: 85.1149 bits (209), Expect = 5.366e-91 Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MGAVEGYR+AGGPLG + DPLYPGGSFDPLGLA+DPE AELKVK+ Sbjct: 167 MGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKE 212 The following BLAST results are available for this feature:
BLAST of CF417144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417144 ID=CF417144; Name=CF417144; organism=Citrus sinensis; type=EST; length=628bpback to top |