CF417144

Overview
NameCF417144
Unique NameCF417144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:109..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 4.881e-95
Identity = 135/160 (84.38%), Postives = 142/160 (88.75%), Query Frame = 2
Query:    2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSK--SVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSS S  GKAV L P+ +E+   GRI+MRKT  K  +V S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 164          

HSP 2 Score: 92.4337 bits (228), Expect = 4.881e-95
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG V DPLYPGGSFDPLGLADDPEAFAELKVK+
Sbjct:  170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 215          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 6.367e-95
Identity = 134/160 (83.75%), Postives = 144/160 (90.00%), Query Frame = 2
Query:    2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSSS F GK V L+PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPEL ARNGVKFGEAVW  AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 164          

HSP 2 Score: 90.5077 bits (223), Expect = 6.367e-95
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  170 MGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 1.414e-94
Identity = 127/151 (84.11%), Postives = 137/151 (90.73%), Query Frame = 2
Query:   20 SFVGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            +  G+AV L+P+  E+    + +MRKT SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCVFPELL+RNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    2 TLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 152          

HSP 2 Score: 93.5893 bits (231), Expect = 1.414e-94
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG VTDP+YPGGSFDPLGLADDPEAFAELKVK+
Sbjct:  158 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE 203          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 2.406e-94
Identity = 134/160 (83.75%), Postives = 146/160 (91.25%), Query Frame = 2
Query:    2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSSS F GKAV L+PS +E++  G+++MRKT SK+  VSS SPWYGP+RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF  G+QIFS+GGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWA 164          

HSP 2 Score: 87.4261 bits (215), Expect = 2.406e-94
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AG PLG V DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  170 MGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.406e-94
Identity = 134/160 (83.75%), Postives = 146/160 (91.25%), Query Frame = 2
Query:    2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMA+SSS F GKAVN+ PS ++++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPEL ARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMAISSSSFAGKAVNV-PSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 163          

HSP 2 Score: 91.6633 bits (226), Expect = 2.406e-94
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLADDPEAFAELKVK+
Sbjct:  169 MGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKE 214          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 1.547e-93
Identity = 132/160 (82.50%), Postives = 143/160 (89.38%), Query Frame = 2
Query:    2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSSS F GKAV L+ S +E++  G+++MRKT +K+   SS SPWYGPDRVKYLGPFSGE PSYLTGEFP DYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPEL ARNG+KFGEAVWF AGAQIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWA 164          

HSP 2 Score: 90.1225 bits (222), Expect = 1.547e-93
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  170 MGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKE 215          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 7.627e-93
Identity = 132/160 (82.50%), Postives = 144/160 (90.00%), Query Frame = 2
Query:    2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSSS F GKAVN+ PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEV HCRW MLGALGCVFPEL ARNGVKFGEAVWF AG+QIF EGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSSSFAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWA 163          

HSP 2 Score: 90.1225 bits (222), Expect = 7.627e-93
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLADDPEAFAEL+VK+
Sbjct:  169 MGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKE 214          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 4.113e-91
Identity = 132/161 (81.99%), Postives = 140/161 (86.96%), Query Frame = 2
Query:    2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSS+ F GKAVN+  S        R++MRKT +K+    +SGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSLIHAQSILAIWA
Sbjct:    5 TMALSSTAFAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 162          

HSP 2 Score: 90.8929 bits (224), Expect = 4.113e-91
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG V DPLYPGGSFDPLGLADDPEAF ELKVK+
Sbjct:  168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKE 213          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 5.366e-91
Identity = 132/158 (83.54%), Postives = 142/158 (89.87%), Query Frame = 2
Query:    2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSS +F GKAV L+P  +E+   GR++MRKT   +  SGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSPAFAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 162          

HSP 2 Score: 78.9518 bits (193), Expect = 5.366e-91
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 1
Query:  490 MGAVEGYRIAG-GPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AG GPLG   D LYPGGSFDPLGLA DPEAFAELKVK+
Sbjct:  168 MGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKE 214          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.366e-91
Identity = 133/158 (84.18%), Postives = 140/158 (88.61%), Query Frame = 2
Query:    2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSS +  GKAV +APS +EL   GR+SMRKT    VS  SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSIL+IWA
Sbjct:    5 TMALSSPALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWA 161          

HSP 2 Score: 85.1149 bits (209), Expect = 5.366e-91
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AGGPLG + DPLYPGGSFDPLGLA+DPE  AELKVK+
Sbjct:  167 MGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKE 212          
The following BLAST results are available for this feature:
BLAST of CF417144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2A_SPIOL4.881e-9584.38Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP6.367e-9583.75Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_CUCSA1.414e-9484.11Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_NICPL2.406e-9483.75Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB24_PETSP2.406e-9483.75Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_PETSP1.547e-9382.50Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_PETSP7.627e-9382.50Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_MAIZE4.113e-9181.99Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL5.366e-9183.54Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_APIGR5.366e-9184.18Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-074 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417144 ID=CF417144; Name=CF417144; organism=Citrus sinensis; type=EST; length=628bp
TACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCC
CTTCANGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACC
GGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGT
CAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTG
AGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCA
GAAACCTTTGCCAAGAACCGTGAACTCGAAGTCNTCCACTGCAGATGGGC
CATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACG
GAGTCAAGTTCGGTGAGGCCGTGTGGTTCANGGCGGGGGCCCAGATCTTC
AGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCA
GAGCATCTTGGCCATCTGGGCTNTGCCAGGTGGTCTTGNATGGGAGCCGT
TGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGANGTGACTGACCCAT
TGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAG
GCTTTTGCTGAGCTCAAGGTTAAGAAAT
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