CF417144

Overview
NameCF417144
Unique NameCF417144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.646e-90
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 2
Query:   77 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            GR+SMRKT SK+VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCVFPELLARNGVKFGEA WF AG+QIFSEGGLDYLGN SLIHAQSILAIWA
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWA 142          

HSP 2 Score: 91.2781 bits (225), Expect = 2.646e-90
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG VTDP+YPGGSFDPL LADDPEAFAELKVK+
Sbjct:  148 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKE 193          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.500e-90
Identity = 133/161 (82.61%), Postives = 140/161 (86.96%), Query Frame = 2
Query:    2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSS+ F GKAVN+  S   L    R++MRKT +K+    SSGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSLIHAQSILAIWA
Sbjct:    5 TMALSSTAFAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 162          

HSP 2 Score: 88.1965 bits (217), Expect = 4.500e-90
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGA+EGYR+AGGPLG V DPLYPGG+FDPLGLADDPEAFA++KVK+
Sbjct:  168 MGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKE 213          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 9.990e-90
Identity = 129/160 (80.62%), Postives = 137/160 (85.62%), Query Frame = 2
Query:    2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            +MALSS +  GK + L PS  EL    R +MRK  T  K  SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEV H RWAMLGALGCVFPELL+RNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    8 SMALSSPTLAGKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 166          

HSP 2 Score: 92.4337 bits (228), Expect = 9.990e-90
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG V DPLYPGGSFDPLGLADDPEAFAELKVK+
Sbjct:  172 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 217          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 2.893e-89
Identity = 129/158 (81.65%), Postives = 135/158 (85.44%), Query Frame = 2
Query:    2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSSS F GKAV    S +E+    R+SMRKT +     GSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCVFPELLARNGVKFGEAVWF  G+QIFSEGGL YLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSSTFAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWA 161          

HSP 2 Score: 88.9669 bits (219), Expect = 2.893e-89
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLADD EAFAELKVK+
Sbjct:  167 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKE 212          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 4.923e-89
Identity = 130/162 (80.25%), Postives = 138/162 (85.19%), Query Frame = 2
Query:    2 TMALSS-SFVGKAVNLA--PSXNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            +MALSS +  GK V  +  PS  EL  G R +MRK  T  K  SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEV H RWAMLGALGCVFPELL+RNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 SMALSSPTLTGKPVETSANPSSQELG-GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 165          

HSP 2 Score: 92.4337 bits (228), Expect = 4.923e-89
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG V DPLYPGGSFDPLGLADDPEAFAELKVK+
Sbjct:  171 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 216          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 4.923e-89
Identity = 131/159 (82.39%), Postives = 143/159 (89.94%), Query Frame = 2
Query:    2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSS +F GKAVNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEV H RWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFS+GGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 163          

HSP 2 Score: 78.9518 bits (193), Expect = 4.923e-89
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 1
Query:  490 MGAVEGYRIAG-GPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AG GPLG   D LYPGGSFDPLGLA DPEAFAELKVK+
Sbjct:  169 MGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKE 215          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 4.924e-89
Identity = 128/159 (80.50%), Postives = 135/159 (84.91%), Query Frame = 2
Query:    2 TMALSSSFVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMA+SS+ +        S  E    GRI+MRKT  K    +SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCVFPELL+RNGVKFGEAVWF AG+QIFSEGGLDYLGNPSLIHAQSILAIWA
Sbjct:    5 TMAISSTAMAGTPIKVGSFGE----GRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 159          

HSP 2 Score: 92.4337 bits (228), Expect = 4.924e-89
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG V DPLYPGGSFDPLGLADDPEAFAELKVK+
Sbjct:  165 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 210          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 1.860e-88
Identity = 130/161 (80.75%), Postives = 137/161 (85.09%), Query Frame = 2
Query:    2 TMALSSSFVGKAVNLAPSXNELSNG-GRISMRKTGSK---SVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSS  + +A   APS +    G  RI+MRKT +K   + SSGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSLIHAQSILAIWA
Sbjct:    5 TMALSSPVMARA---APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 162          

HSP 2 Score: 91.2781 bits (225), Expect = 1.860e-88
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG V DPLYPGG+FDPLGLADDPEAFAELKVK+
Sbjct:  168 MGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKE 213          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.426e-88
Identity = 130/159 (81.76%), Postives = 142/159 (89.31%), Query Frame = 2
Query:    2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSS +F GKAV L+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEV H RWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFS+GGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 163          

HSP 2 Score: 78.9518 bits (193), Expect = 2.426e-88
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 1
Query:  490 MGAVEGYRIAG-GPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AG GPLG   D LYPGGSFDPLGLA DPEAFAELKVK+
Sbjct:  169 MGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKE 215          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 3.165e-88
Identity = 129/160 (80.62%), Postives = 139/160 (86.88%), Query Frame = 2
Query:    2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TM+LSSS F GKAV   PS + L    R++MRKT +K+  VSS SPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEA WF AG+QIFS+GGLDYLGNPSL+HAQS+LAIWA
Sbjct:    5 TMSLSSSSFAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWA 163          

HSP 2 Score: 86.2705 bits (212), Expect = 3.165e-88
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG + DPLYPGGSFDPLGLA+ P+AFAELKVK+
Sbjct:  169 MGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKE 214          
The following BLAST results are available for this feature:
BLAST of CF417144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB21_SOYBN2.646e-9093.18Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB29_MAIZE4.500e-9082.61Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_PEA9.990e-9080.63Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_HORVU2.893e-8981.65Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB28_PEA4.923e-8980.25Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_ARATH4.923e-8982.39Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_MAIZE4.924e-8980.50Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_ORYSJ1.860e-8880.75Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ARATH2.426e-8881.76Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_WHEAT3.165e-8880.63Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-074 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417144 ID=CF417144; Name=CF417144; organism=Citrus sinensis; type=EST; length=628bp
TACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCC
CTTCANGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACC
GGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGT
CAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTG
AGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCA
GAAACCTTTGCCAAGAACCGTGAACTCGAAGTCNTCCACTGCAGATGGGC
CATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACG
GAGTCAAGTTCGGTGAGGCCGTGTGGTTCANGGCGGGGGCCCAGATCTTC
AGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCA
GAGCATCTTGGCCATCTGGGCTNTGCCAGGTGGTCTTGNATGGGAGCCGT
TGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGANGTGACTGACCCAT
TGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAG
GCTTTTGCTGAGCTCAAGGTTAAGAAAT
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