CF417144 | Citrus Genome Database

Overview


Name	CF417144
Unique Name	CF417144
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	628

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9540	contig	Csv1_Contig9540:109..734.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.559e-87
Identity = 123/158 (77.85%), Postives = 132/158 (83.54%), Query Frame = 2

Query:   29 GKAVNLAPSXNELSNGG-------RISMRKTGSKSVS---SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AGAQIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWA 171

HSP 2 Score: 92.0485 bits (227), Expect = 1.559e-87
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG VTDP+YPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  177 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKE 222

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 2.654e-87
Identity = 127/160 (79.38%), Postives = 135/160 (84.38%), Query Frame = 2

Query:    2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSS +  GKA        ++   GRI+MRK+ +K    +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSLIHAQSILAIWA
Sbjct:    5 TMALSSPALAGKAAA------KVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 158

HSP 2 Score: 92.4337 bits (228), Expect = 2.654e-87
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG V DPLYPGGSFDPLGLADDPEAFAELKVK+
Sbjct:  164 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 209

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.443e-86
Identity = 129/158 (81.65%), Postives = 134/158 (84.81%), Query Frame = 2

Query:    2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSSS   G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYGPDRVKYLGPFSGE PSYLTGEF G        LSADPETFAKNRELEV H RWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSLIHAQSILAIWA
Sbjct:    5 TMALSSSSLAGQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 153

HSP 2 Score: 91.2781 bits (225), Expect = 6.443e-86
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG VTDP+YPGGSFDPLGLADDPEA AELKVK+
Sbjct:  159 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKE 204

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 1.096e-85
Identity = 123/153 (80.39%), Postives = 131/153 (85.62%), Query Frame = 2

Query:   41 NLAPSXNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            ++ P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCVFPELLARNGVKFGEAVWF AGAQIFSEGGLDYLG+P LIHAQSILAIWA
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWA 175

HSP 2 Score: 90.5077 bits (223), Expect = 1.096e-85
Identity = 39/46 (84.78%), Postives = 45/46 (97.83%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGA+EGYR+AGGPLG VTDP+YPGG+FDPLGLADDP+AFAELKVK+
Sbjct:  181 MGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKE 226

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.397e-85
Identity = 123/153 (80.39%), Postives = 131/153 (85.62%), Query Frame = 2

Query:   41 NLAPSXNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            ++ P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCVFPELLARNGVKFGEAVWF AGAQIFSEGGLDYLG+P LIHAQSILAIWA
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWA 175

HSP 2 Score: 88.1965 bits (217), Expect = 5.397e-85
Identity = 37/46 (80.43%), Postives = 45/46 (97.83%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGA+EGYR+AGGPLG VTDP+YPGG+FDPLGLADDP+AFA++KVK+
Sbjct:  181 MGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKE 226

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 5.415e-82
Identity = 111/125 (88.80%), Postives = 115/125 (92.00%), Query Frame = 2

Query:   98 TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            T  K  SS SPW+GPD VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCVFPELL+RNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 125

HSP 2 Score: 87.4261 bits (215), Expect = 5.415e-82
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG V DPLYPGGSFDPLGLA+ PEAFAELKVK+
Sbjct:  131 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKE 176

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.474e-81
Identity = 113/158 (71.52%), Postives = 126/158 (79.75%), Query Frame = 2

Query:    2 TMALSSSFVGKAVNLAPSXNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            T AL+S+F G+ +      +     G   ++    KS + SGS WYG DR  YLGPFSG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCV PELLA+NGVKFGEAVWF AG+QIF+EGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TAALTSTFSGQQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWA 162

HSP 2 Score: 90.8929 bits (224), Expect = 3.474e-81
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AGGPLG V DP+YPGGSFDPLGLADDPEAFAELKVK+
Sbjct:  168 MGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKE 213

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 2.910e-80
Identity = 111/150 (74.00%), Postives = 123/150 (82.00%), Query Frame = 2

Query:   41 NLAPSXNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            +L    NELS         R++MR+T SKS  S + WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEV H RWAMLGALGC+ PELLA++GVKFGEAVWF AGAQIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:   16 SLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWA 165

HSP 2 Score: 90.5077 bits (223), Expect = 2.910e-80
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AGGPLG VTDP+YPGGSFDPLGLADDP+ FAELKVK+
Sbjct:  171 MGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKE 216

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 3.796e-80
Identity = 111/133 (83.46%), Postives = 121/133 (90.98%), Query Frame = 2

Query:   74 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            GGR+SMR+T   + +S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPE+L++NGVKFGEAVWF AG+QIFSEGGLDYLGNP+LIHAQSILAIWA
Sbjct:   32 GGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWA 162

HSP 2 Score: 82.0333 bits (201), Expect = 3.796e-80
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG VEGYR+ GGPLG   DP+YPGG+FDPLGLADDP+AFAELKVK+
Sbjct:  168 MGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKE 213

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.201e-78
Identity = 117/160 (73.12%), Postives = 128/160 (80.00%), Query Frame = 2

Query:    2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMA++S + VGK    A    ++   GRI+MRKT +K     SGSPWYG DRV YLGP SG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEV HCRWA+   LGCVFPELLARNGVKFGE VWF AG+QIFSEGGL + GNPSL+HAQSILAIWA
Sbjct:    5 TMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWA 161

HSP 2 Score: 79.337 bits (194), Expect = 1.201e-78
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGY +AGG LG V DPLY GGSFDPLGL DDPE FAELKVK+
Sbjct:  167 MGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKE 212

The following BLAST results are available for this feature:

BLAST of CF417144 vs. ExPASy Swiss-Prot

BLAST of CF417144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71


Match Name	E-value	Identity	Description
CB2B_PINSY	1.559e-87	77.85	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB22_ORYSJ	2.654e-87	79.38	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB22_SOYBN	6.443e-86	81.65	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB2A_PINSY	1.096e-85	80.39	Chlorophyll a-b binding protein type 2 member 1A, ...	[more]
CB2A_PYRPY	5.397e-85	80.39	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB21_PEA	5.415e-82	88.80	Chlorophyll a-b binding protein AB96 (Fragment) OS...	[more]
CB23_POLMU	3.474e-81	71.52	Chlorophyll a-b binding protein type 1 member F3, ...	[more]
CB2_PHYPA	2.910e-80	74.00	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_GOSHI	3.796e-80	83.46	Chlorophyll a-b binding protein 151, chloroplastic...	[more]
CB48_MAIZE	1.201e-78	73.13	Chlorophyll a-b binding protein 48, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-074 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H5 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417144 ID=CF417144; Name=CF417144; organism=Citrus sinensis; type=EST; length=628bp
TACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCC
CTTCANGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACC
GGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGT
CAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTG
AGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCA
GAAACCTTTGCCAAGAACCGTGAACTCGAAGTCNTCCACTGCAGATGGGC
CATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACG
GAGTCAAGTTCGGTGAGGCCGTGTGGTTCANGGCGGGGGCCCAGATCTTC
AGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCA
GAGCATCTTGGCCATCTGGGCTNTGCCAGGTGGTCTTGNATGGGAGCCGT
TGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGANGTGACTGACCCAT
TGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAG
GCTTTTGCTGAGCTCAAGGTTAAGAAAT