CF417144 | Citrus Genome Database

Overview


Name	CF417144
Unique Name	CF417144
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	628

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9540	contig	Csv1_Contig9540:109..734.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 2.664e-78
Identity = 116/158 (73.42%), Postives = 129/158 (81.65%), Query Frame = 2

Query:   17 SSFVGKAVNLAPSXNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            S+FVG+AV    S NE          GRI+MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEV HCRWAMLGALGCVFPE+L++NGVKFGEAVWF AG+QIFSEGGLDYLGNP+L+HAQSILAIWA
Sbjct:    9 SAFVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWA 162

HSP 2 Score: 80.1073 bits (196), Expect = 2.664e-78
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG VEGYR+ GGPLG   D +YPGG+FDPLGLADDPEAFAELKVK+
Sbjct:  168 MGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 2.664e-78
Identity = 115/158 (72.78%), Postives = 128/158 (81.01%), Query Frame = 2

Query:   17 SSFVGKAVNLAPSXNELS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            S+F G+      S NEL       NGGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEV HCRWAMLGALGCVFPE+L++NGVKFGEAVWF AG+QIFSEGGLDYLGNP+LIHAQSILA+WA
Sbjct:    9 SAFAGQTA--LKSQNELVRKIGSFNGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWA 162

HSP 2 Score: 80.1073 bits (196), Expect = 2.664e-78
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG +EGYR+ GGPLG   D +YPGG+FDPLGLADDPEAFAELKVK+
Sbjct:  168 MGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 5.911e-78
Identity = 116/158 (73.42%), Postives = 131/158 (82.91%), Query Frame = 2

Query:   14 SSSFVGKAVNLAPSXNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEV H RWAMLGALGCVFPE+L++NGVKFGEAVWF AGAQIFSEGGLDYLGNP+L+HAQSILAIWA
Sbjct:    9 TTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 160

HSP 2 Score: 77.0258 bits (188), Expect = 5.911e-78
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG VEGYR+ GGPLG   D +YPGG+FDPLGLADDP+ FAELKVK+
Sbjct:  166 MGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKE 211

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 5.911e-78
Identity = 116/158 (73.42%), Postives = 131/158 (82.91%), Query Frame = 2

Query:   14 SSSFVGKAVNLAPSXNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEV H RWAMLGALGCVFPE+L++NGVKFGEAVWF AGAQIFSEGGLDYLGNP+L+HAQSILAIWA
Sbjct:    9 TTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 160

HSP 2 Score: 77.0258 bits (188), Expect = 5.911e-78
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG VEGYR+ GGPLG   D +YPGG+FDPLGLADDP+ FAELKVK+
Sbjct:  166 MGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKE 211

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 7.728e-78
Identity = 120/157 (76.43%), Postives = 131/157 (83.44%), Query Frame = 2

Query:   17 SSFVGKAVNLAPSXNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            S+F G+ + L P  NEL      NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLA+NGVKFGEAVWF AG+QIF EGGLDYLGNP+L+HAQSILAIWA
Sbjct:    9 SAFAGQTL-LKPQ-NELVRKVGGNGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWA 161

HSP 2 Score: 70.8626 bits (172), Expect = 7.728e-78
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAF 606
            MGAVEGYR+ GGPLG   D LYPGG+FDPLGLA+DPEAF
Sbjct:  167 MGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 2.913e-77
Identity = 107/133 (80.45%), Postives = 118/133 (88.72%), Query Frame = 2

Query:   74 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            GGR++MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEV HCRWAMLGALGCVFPE+L++NGV FGEAVWF AG+QIFSEGGLDYLGNP+LIHAQSILAIWA
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWA 134

HSP 2 Score: 80.1073 bits (196), Expect = 2.913e-77
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG VEGYR+ GGPLG   D +YPGG+FDPLGLADDPEAFAELKVK+
Sbjct:  140 MGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 185

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 4.950e-77
Identity = 114/158 (72.15%), Postives = 126/158 (79.75%), Query Frame = 2

Query:   17 SSFVGKAVNLAPSXNELSN------GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            S+F G+      S NEL        GGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEV HCRWAMLGALGCVFPE+L++NGV FGEAVWF AG+QIFSEGGLDYLGNP+LIHAQSILAIWA
Sbjct:    9 SAFAGQTA--LKSQNELVRKIGSFGGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWA 162

HSP 2 Score: 80.1073 bits (196), Expect = 4.950e-77
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG VEGYR+ GGPLG   D +YPGG+FDPLGLADDPEAFAELKVK+
Sbjct:  168 MGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.950e-77
Identity = 108/132 (81.82%), Postives = 118/132 (89.39%), Query Frame = 2

Query:   77 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            GR SMR+T  K+V   S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGC+FPELL++NGV+FGEAVWF AGAQIFSEGGLDYLGNP+L+HAQSILAIWA
Sbjct:   32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 161

HSP 2 Score: 83.9593 bits (206), Expect = 4.950e-77
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG +EGYR+ GGPLG   DPLYPGG+FDPLGLADDPEAFAELKVK+
Sbjct:  167 MGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKE 212

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.178e-76
Identity = 117/158 (74.05%), Postives = 127/158 (80.38%), Query Frame = 2

Query:   14 SSSFVGKAVNLAPSXNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            SSS  G+ + L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGPFS   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEV HCRWAMLGALGCVFPELLA+NG+KFGEAVWF AGAQIFSEGGLDY GNP+LIHAQSILAIWA
Sbjct:    9 SSSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWA 163

HSP 2 Score: 74.7146 bits (182), Expect = 3.178e-76
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG +EGYR+ GG LG   DPL PGG+FDPLGLADDPEA AELKVK+
Sbjct:  169 MGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKE 214

[Close]

BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.040e-75
Identity = 105/131 (80.15%), Postives = 114/131 (87.02%), Query Frame = 2

Query:   80 RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            R +MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEV H RWAMLGALGC FPELL +NGVKFGEAVWF AG+QIF+EGGLDYLGNP+LIHAQSILAIWA
Sbjct:   34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWA 162

HSP 2 Score: 81.6481 bits (200), Expect = 2.040e-75
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1

Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG VEGYR+ GGPLG   DPLYPGG+FDPLGLADDP++FAELKVK+
Sbjct:  168 MGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKE 213

The following BLAST results are available for this feature:

BLAST of CF417144 vs. ExPASy Swiss-Prot

BLAST of CF417144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71


Match Name	E-value	Identity	Description
CB24_SOLLC	2.664e-78	73.42	Chlorophyll a-b binding protein 4, chloroplastic O...	[more]
CB23_TOBAC	2.664e-78	72.78	Chlorophyll a-b binding protein 36, chloroplastic ...	[more]
CB23_ORYSJ	5.911e-78	73.42	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_ORYSI	5.911e-78	73.42	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_SILPR	7.728e-78	76.43	Chlorophyll a-b binding protein, chloroplastic (Fr...	[more]
CB25_SOLLC	2.913e-77	80.45	Chlorophyll a-b binding protein 5, chloroplastic (...	[more]
CB26_PETSP	4.950e-77	72.15	Chlorophyll a-b binding protein 37, chloroplastic ...	[more]
CB21_LEMGI	4.950e-77	81.82	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB21_PINTH	3.178e-76	74.05	Chlorophyll a-b binding protein type I, chloroplas...	[more]
CB215_PEA	2.040e-75	80.15	Chlorophyll a-b binding protein 215, chloroplastic...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-074 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H5 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417144 ID=CF417144; Name=CF417144; organism=Citrus sinensis; type=EST; length=628bp
TACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCC
CTTCANGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACC
GGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGT
CAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTG
AGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCA
GAAACCTTTGCCAAGAACCGTGAACTCGAAGTCNTCCACTGCAGATGGGC
CATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACG
GAGTCAAGTTCGGTGAGGCCGTGTGGTTCANGGCGGGGGCCCAGATCTTC
AGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCA
GAGCATCTTGGCCATCTGGGCTNTGCCAGGTGGTCTTGNATGGGAGCCGT
TGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGANGTGACTGACCCAT
TGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAG
GCTTTTGCTGAGCTCAAGGTTAAGAAAT