CF417144
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 1.007e-74 Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 2 Query: 164 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H WAMLGALGCVFPELL+RNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 103 HSP 2 Score: 93.5893 bits (231), Expect = 1.007e-74 Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MGAVEGYRIAGGPLG VTDP+YPGGSFDPLGLADDPEAFAELKVK+ Sbjct: 109 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE 154
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 4.474e-66 Identity = 103/148 (69.59%), Postives = 110/148 (74.32%), Query Frame = 2 Query: 26 VGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIW 469 + K L P + L +M K +KS S S RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEV H R AM ALGC+FPELL+ G FGEAVWF AGAQIFSEGGLDYLGNPSL+HAQSILAIW Sbjct: 20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIW 165 HSP 2 Score: 76.6406 bits (187), Expect = 4.474e-66 Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MGAVEGYRIA GPLG VTDPLYP GSFD LGLA+D EAFAELKVK+ Sbjct: 172 MGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKE 216
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 1.294e-65 Identity = 93/128 (72.66%), Postives = 108/128 (84.38%), Query Frame = 2 Query: 92 RKTGSKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILA 463 +KT +K+ SSG +YGP+R K+LGP+S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+ H RWAMLGALGC PELLA++G KFGEAVWF AGAQIFSEGGLDYLGNPSL+HAQ+I+A Sbjct: 20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVA 147 HSP 2 Score: 76.6406 bits (187), Expect = 1.294e-65 Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MG +EGYR+ GGP G DPLYPG SFDPLGLADDP+ FAELKVK+ Sbjct: 156 MGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKE 201
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 2.399e-64 Identity = 91/120 (75.83%), Postives = 101/120 (84.17%), Query Frame = 2 Query: 116 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 S+G WYGPDR K+LGPFS P+YLTGEFPGDYGWDTAGLSADPETF K RELEV H RWA+LGALG + PELL+ GVKFGE VWF AGAQIFSEGGLDYLG+P+LIHAQ+I+A A Sbjct: 34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLA 153 HSP 2 Score: 76.6406 bits (187), Expect = 2.399e-64 Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MG +EGYR+ GGP G DPLYPG SFDPLGLADDP+ FAELKVK+ Sbjct: 159 MGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKE 204
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 8.965e-61 Identity = 96/156 (61.54%), Postives = 115/156 (73.72%), Query Frame = 2 Query: 2 TMALSSSFVGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAI 466 T+ ++ F+G+ N P + ++ G ++ S WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEV H RWAMLGALGC+FPE+L + V F E VWF AG+QIFS+GGLDYLGNP+L+HAQSILA+ Sbjct: 12 TVVKATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAV 159 HSP 2 Score: 58.151 bits (139), Expect = 8.965e-61 Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGS-FDPLGLADDPEAFAELKVKK 627 MG VEG+RI G P + LYPGG FDPLGLADDP FAELKVK+ Sbjct: 167 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKE 213
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 4.404e-60 Identity = 98/148 (66.22%), Postives = 113/148 (76.35%), Query Frame = 2 Query: 29 GKAVNLAPSXN-ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAI 466 G+A + +P + + GRI+M WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEV H RWAMLGALGCVFPE+L + GV+F E VWF AG+QIFSEGGLDYLGNP+L+HAQSILA+ Sbjct: 24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAV 162 HSP 2 Score: 54.6842 bits (130), Expect = 4.404e-60 Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGS-FDPLGLADDPEAFAELKVKK 627 MG VEG+RI G + LYPGG FDPLGLADDP FAELKVK+ Sbjct: 170 MGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKE 216
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 2.329e-55 Identity = 83/116 (71.55%), Postives = 99/116 (85.34%), Query Frame = 2 Query: 131 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 +YGPDR K+LGPFS + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+ H RWA+LGALG + PELL++ GV+FGE VWF AGAQIF++GGL+YLGN SLIHAQSI+A A Sbjct: 33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLA 148 HSP 2 Score: 62.3882 bits (150), Expect = 2.329e-55 Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTD--PLYPGGSFDPLGLADDPEAFAELKVKK 627 MG E YR GG G + D LYPGG FDPLGLADDP+ FAELKVK+ Sbjct: 154 MGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKE 201
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 6.626e-52 Identity = 79/128 (61.72%), Postives = 93/128 (72.66%), Query Frame = 2 Query: 95 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 K SKS SS + +YGPD + P TGEFPGDYGWDTAGLSADPETF + RELE+ H R +LGALG V PELLA +G+KFG+ A+WF AGA IF +GGL+YLGNPSLIHAQ+I+A A Sbjct: 45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLA 171 HSP 2 Score: 75.8702 bits (185), Expect = 6.626e-52 Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MG VEGYR+ GGP G DPLYPG +FDPLGLADDP+ FAELKVK+ Sbjct: 177 MGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKE 222
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.863e-35 Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 2 Query: 332 ELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472 ELL +NGVKFGEAVWF AGAQIFSEGGLDYLGNP+LIHAQSILAIWA Sbjct: 1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 47 HSP 2 Score: 77.7962 bits (190), Expect = 1.863e-35 Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 MG +EGYR+ GGPLG DPLYPG +FDPLGLADDPEA AELKVK+ Sbjct: 53 MGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKE 98
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 6.813e-28 Identity = 55/116 (47.41%), Postives = 64/116 (55.17%), Query Frame = 2 Query: 104 SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFG-EAVWFXAGAQIFSEGGLDYLG 427 SK+VS S WYGPDR +L E P YL GE GDYG+D GL PE FAK + E+ H RWAMLGA G + PE L + G G EAVWF GA + L+Y G Sbjct: 49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164 HSP 2 Score: 47.7506 bits (112), Expect = 6.813e-28 Identity = 26/46 (56.52%), Postives = 29/46 (63.04%), Query Frame = 1 Query: 490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627 +G E YRI G D L+PGG FDPLGLA DPE A LKVK+ Sbjct: 182 LGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKE 225 The following BLAST results are available for this feature:
BLAST of CF417144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417144 ID=CF417144; Name=CF417144; organism=Citrus sinensis; type=EST; length=628bpback to top |