CF417144

Overview
NameCF417144
Unique NameCF417144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:109..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.007e-74
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 2
Query:  164 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H  WAMLGALGCVFPELL+RNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 103          

HSP 2 Score: 93.5893 bits (231), Expect = 1.007e-74
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG VTDP+YPGGSFDPLGLADDPEAFAELKVK+
Sbjct:  109 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE 154          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.474e-66
Identity = 103/148 (69.59%), Postives = 110/148 (74.32%), Query Frame = 2
Query:   26 VGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIW 469
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEV H R AM  ALGC+FPELL+  G  FGEAVWF AGAQIFSEGGLDYLGNPSL+HAQSILAIW
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIW 165          

HSP 2 Score: 76.6406 bits (187), Expect = 4.474e-66
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIA GPLG VTDPLYP GSFD LGLA+D EAFAELKVK+
Sbjct:  172 MGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKE 216          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.294e-65
Identity = 93/128 (72.66%), Postives = 108/128 (84.38%), Query Frame = 2
Query:   92 RKTGSKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILA 463
            +KT +K+    SSG  +YGP+R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+ H RWAMLGALGC  PELLA++G KFGEAVWF AGAQIFSEGGLDYLGNPSL+HAQ+I+A
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVA 147          

HSP 2 Score: 76.6406 bits (187), Expect = 1.294e-65
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG +EGYR+ GGP G   DPLYPG SFDPLGLADDP+ FAELKVK+
Sbjct:  156 MGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKE 201          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.399e-64
Identity = 91/120 (75.83%), Postives = 101/120 (84.17%), Query Frame = 2
Query:  116 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            S+G  WYGPDR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEV H RWA+LGALG + PELL+   GVKFGE VWF AGAQIFSEGGLDYLG+P+LIHAQ+I+A  A
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLA 153          

HSP 2 Score: 76.6406 bits (187), Expect = 2.399e-64
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG +EGYR+ GGP G   DPLYPG SFDPLGLADDP+ FAELKVK+
Sbjct:  159 MGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKE 204          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.965e-61
Identity = 96/156 (61.54%), Postives = 115/156 (73.72%), Query Frame = 2
Query:    2 TMALSSSFVGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAI 466
            T+  ++ F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEV H RWAMLGALGC+FPE+L +   V F E VWF AG+QIFS+GGLDYLGNP+L+HAQSILA+
Sbjct:   12 TVVKATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAV 159          

HSP 2 Score: 58.151 bits (139), Expect = 8.965e-61
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGS-FDPLGLADDPEAFAELKVKK 627
            MG VEG+RI G P     + LYPGG  FDPLGLADDP  FAELKVK+
Sbjct:  167 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKE 213          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.404e-60
Identity = 98/148 (66.22%), Postives = 113/148 (76.35%), Query Frame = 2
Query:   29 GKAVNLAPSXN-ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAI 466
            G+A + +P  +   +  GRI+M             WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEV H RWAMLGALGCVFPE+L +  GV+F E VWF AG+QIFSEGGLDYLGNP+L+HAQSILA+
Sbjct:   24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAV 162          

HSP 2 Score: 54.6842 bits (130), Expect = 4.404e-60
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGS-FDPLGLADDPEAFAELKVKK 627
            MG VEG+RI G       + LYPGG  FDPLGLADDP  FAELKVK+
Sbjct:  170 MGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKE 216          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.329e-55
Identity = 83/116 (71.55%), Postives = 99/116 (85.34%), Query Frame = 2
Query:  131 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            +YGPDR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+ H RWA+LGALG + PELL++  GV+FGE VWF AGAQIF++GGL+YLGN SLIHAQSI+A  A
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLA 148          

HSP 2 Score: 62.3882 bits (150), Expect = 2.329e-55
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTD--PLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG  E YR  GG  G + D   LYPGG FDPLGLADDP+ FAELKVK+
Sbjct:  154 MGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKE 201          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 6.626e-52
Identity = 79/128 (61.72%), Postives = 93/128 (72.66%), Query Frame = 2
Query:   95 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            K  SKS SS + +YGPD          + P   TGEFPGDYGWDTAGLSADPETF + RELE+ H R  +LGALG V PELLA  +G+KFG+ A+WF AGA IF +GGL+YLGNPSLIHAQ+I+A  A
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLA 171          

HSP 2 Score: 75.8702 bits (185), Expect = 6.626e-52
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG VEGYR+ GGP G   DPLYPG +FDPLGLADDP+ FAELKVK+
Sbjct:  177 MGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKE 222          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.863e-35
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 2
Query:  332 ELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            ELL +NGVKFGEAVWF AGAQIFSEGGLDYLGNP+LIHAQSILAIWA
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 47          

HSP 2 Score: 77.7962 bits (190), Expect = 1.863e-35
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MG +EGYR+ GGPLG   DPLYPG +FDPLGLADDPEA AELKVK+
Sbjct:   53 MGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKE 98          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.813e-28
Identity = 55/116 (47.41%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  104 SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFG-EAVWFXAGAQIFSEGGLDYLG 427
            SK+VS  S     WYGPDR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+ H RWAMLGA G + PE L + G   G EAVWF  GA +     L+Y G
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164          

HSP 2 Score: 47.7506 bits (112), Expect = 6.813e-28
Identity = 26/46 (56.52%), Postives = 29/46 (63.04%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            +G  E YRI  G      D L+PGG FDPLGLA DPE  A LKVK+
Sbjct:  182 LGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKE 225          
The following BLAST results are available for this feature:
BLAST of CF417144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB22_CUCSA1.007e-7493.20Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_MALDO4.474e-6669.59Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLRE1.294e-6572.66Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO2.399e-6475.83Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC8.965e-6161.54Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU4.404e-6066.22Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE2.329e-5571.55Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA6.626e-5261.72Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY1.863e-3591.49Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH6.813e-2847.41Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-074 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417144 ID=CF417144; Name=CF417144; organism=Citrus sinensis; type=EST; length=628bp
TACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCC
CTTCANGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACC
GGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGT
CAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTG
AGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCA
GAAACCTTTGCCAAGAACCGTGAACTCGAAGTCNTCCACTGCAGATGGGC
CATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACG
GAGTCAAGTTCGGTGAGGCCGTGTGGTTCANGGCGGGGGCCCAGATCTTC
AGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCA
GAGCATCTTGGCCATCTGGGCTNTGCCAGGTGGTCTTGNATGGGAGCCGT
TGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGANGTGACTGACCCAT
TGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAG
GCTTTTGCTGAGCTCAAGGTTAAGAAAT
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