CF417146

Overview
NameCF417146
Unique NameCF417146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB19_BOVIN (Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.957e-41
Identity = 64/123 (52.03%), Postives = 93/123 (75.61%), Query Frame = 1 
Query:  142 TMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            T++  +DYLFK++LIGDS VGK+C++  F    Y+E+  +TIGVDF +R +E DGK +K+Q+WDTAGQERFRTIT SYYR AH  II YD+T + +F +V  W++EI++Y + N+  +L+G +
Sbjct:    9 TVDENFDYLFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNK 131

HSP 2 Score: 42.743 bits (99), Expect = 1.957e-41
Identity = 21/55 (38.18%), Postives = 34/55 (61.82%), Query Frame = 2 
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDR 661
            + NKCDL   + V +E A   A++ G+   +ETSAK+S N+++ F+ MA  +  R
Sbjct:  128 IGNKCDLWEKRHVLFEDACILAEKYGLLAVLETSAKESKNIDEVFVLMARELMAR 182
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 2.549e-41
Identity = 58/127 (45.67%), Postives = 95/127 (74.80%), Query Frame = 1 
Query:  133 KSTTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            +S   +P YD   K++L+GD+GVGK+C L++F D +++  ++I+T+G+DF+ + V  DG  +KLQIWDTAGQERFR++T +YYR A  ++++YD+T++ SF+N++ WL EI  YA  +V  +L+G +
Sbjct:   18 RSPPCSPSYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNK 144

HSP 2 Score: 53.1434 bits (126), Expect = 2.549e-41
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 2 
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 673
            L NK D+++ + +  E  +  A E G+PF+ETSAK   NVE AF+A+A  +K R   Q
Sbjct:  141 LGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQ 198
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 3.323e-41
Identity = 68/123 (55.28%), Postives = 91/123 (73.98%), Query Frame = 1 
Query:  142 TMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            T + EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVG +
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 125

HSP 2 Score: 47.3654 bits (111), Expect = 3.323e-41
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 673
            NK DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I  R+ SQ
Sbjct:  124 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQ 178
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 3.323e-41
Identity = 68/123 (55.28%), Postives = 91/123 (73.98%), Query Frame = 1 
Query:  142 TMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            T + EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVG +
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 125

HSP 2 Score: 47.3654 bits (111), Expect = 3.323e-41
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 673
            NK DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I  R+ SQ
Sbjct:  124 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQ 178
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 3.323e-41
Identity = 68/123 (55.28%), Postives = 91/123 (73.98%), Query Frame = 1 
Query:  142 TMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            T + EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVG +
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 125

HSP 2 Score: 47.3654 bits (111), Expect = 3.323e-41
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 673
            NK DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I  R+ SQ
Sbjct:  124 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQ 178
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 3.323e-41
Identity = 68/123 (55.28%), Postives = 91/123 (73.98%), Query Frame = 1 
Query:  142 TMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            T + EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVG +
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 125

HSP 2 Score: 47.3654 bits (111), Expect = 3.323e-41
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 673
            NK DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I  R+ SQ
Sbjct:  124 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQ 178
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 3.323e-41
Identity = 68/123 (55.28%), Postives = 91/123 (73.98%), Query Frame = 1 
Query:  142 TMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            T + EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVG +
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 125

HSP 2 Score: 47.3654 bits (111), Expect = 3.323e-41
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 673
            NK DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I  R+ SQ
Sbjct:  124 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQ 178
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 3.323e-41
Identity = 68/123 (55.28%), Postives = 91/123 (73.98%), Query Frame = 1 
Query:  142 TMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            T + EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVG +
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 125

HSP 2 Score: 47.3654 bits (111), Expect = 3.323e-41
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 673
            NK DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I  R+ SQ
Sbjct:  124 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQ 178
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 3.323e-41
Identity = 68/123 (55.28%), Postives = 91/123 (73.98%), Query Frame = 1 
Query:  142 TMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            T + EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVG +
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 125

HSP 2 Score: 47.3654 bits (111), Expect = 3.323e-41
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 673
            NK DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I  R+ SQ
Sbjct:  124 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY-RIVSQ 178
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 3.326e-41
Identity = 61/118 (51.69%), Postives = 86/118 (72.88%), Query Frame = 1 
Query:  157 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            Y +LFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  D K IKLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +++FN++  WL +   YA+ N+  +L+G +
Sbjct:    2 YSFLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNK 119

HSP 2 Score: 55.4546 bits (132), Expect = 3.326e-41
Identity = 25/55 (45.45%), Postives = 40/55 (72.73%), Query Frame = 2 
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 664
            + NK D+ + + VSYE  + FADE G+ F+ETSAK ++NVE+AF+  A+ I +++
Sbjct:  116 IGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKI 170
The following BLAST results are available for this feature:
BLAST of CF417146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB19_BOVIN1.957e-4152.03Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 ... [more]
RAB37_HUMAN2.549e-4145.67Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RB11A_RAT3.323e-4155.28Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT3.323e-4155.28Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB3.323e-4155.28Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG3.323e-4155.28Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE3.323e-4155.28Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN3.323e-4155.28Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CANFA3.323e-4155.28Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RAB2A_DICDI3.326e-4151.69Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-076 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417146 ID=CF417146; Name=CF417146; organism=Citrus sinensis; type=EST; length=679bp
TTTTTTTTCTTTTTTGTCTTGTCTTCTGTTTTTGTTGACATTTAATTTCC
CGGCGAAACTCATATCACGAGATCTCGCCGAAGATAATAATCTGTTTTGG
TTAACCGAACCCGAAGCTTTTTTCTTTTACACAAATCTACGACGATGAAT
CCTGAATATGACTATCTGTTTAAGCTTCTGCTTATTGGAGATTCCGGTGT
TGGCAAATCTTGTCTTCTCTTGAGATTTGCTGATGATTCATATATTGAGA
GTTACATCAGCACCATAGGAGTTGATTTTAAAATACGCACTGTTGAGCAA
GATGGGAAGACCATTAAACTTCAAATTTGGGATACTGCTGGTCAAGAAAG
ATTTAGGACAATCACCAGCAGCTACTACCGTGGGGCACATGGTATCATAA
TTGTTTATGATGTGACAGACCAAGAGAGCTTCAATAATGTCAAGCAGTGG
TTGAATGAAATTGACCGTTATGCTAGTGATAATGTCAACAAACTTCTGGT
TGGNAAACAAGTGTGATCTCACTGCAAATAAGGNTGTCTCGTACGAAACA
GCCAAGGCATTTGCAGATGAAATTGGAATACCTTTCATGGAAACTAGTGC
AAAAGATTCTACCAACGTGGAACAGGCATTCATGGCCATGGCTGCTTCAA
TCAAGGATAGAATGGCAAGTCAACCATCC
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