CF417146

Overview
NameCF417146
Unique NameCF417146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.119e-40
Identity = 65/118 (55.08%), Postives = 88/118 (74.58%), Query Frame = 1
Query:  157 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R V  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+G +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNK 120          

HSP 2 Score: 48.1358 bits (113), Expect = 2.119e-40
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 652
            + NK DL + + V  E  +AFA E G+ FMETSAK + NVE+AF+  A  I
Sbjct:  117 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 167          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.601e-40
Identity = 66/120 (55.00%), Postives = 94/120 (78.33%), Query Frame = 1
Query:  154 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQV 513
            +YD+LFK++LIG++GVGK+CL+ RF    +     +TIGVDF I+TVE +G+ +KLQIWDTAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS+ V  +LVG ++
Sbjct:    5 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 124          

HSP 2 Score: 41.2022 bits (95), Expect = 3.601e-40
Identity = 19/49 (38.78%), Postives = 32/49 (65.31%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 652
            NK DL   + VS + A+ F++   + ++ETSAK+S NVE+ F+ +A  +
Sbjct:  122 NKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.601e-40
Identity = 66/120 (55.00%), Postives = 94/120 (78.33%), Query Frame = 1
Query:  154 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQV 513
            +YD+LFK++LIG++GVGK+CL+ RF    +     +TIGVDF I+TVE +G+ +KLQIWDTAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS+ V  +LVG ++
Sbjct:    5 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 124          

HSP 2 Score: 41.2022 bits (95), Expect = 3.601e-40
Identity = 19/49 (38.78%), Postives = 32/49 (65.31%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 652
            NK DL   + VS + A+ F++   + ++ETSAK+S NVE+ F+ +A  +
Sbjct:  122 NKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.601e-40
Identity = 66/120 (55.00%), Postives = 94/120 (78.33%), Query Frame = 1
Query:  154 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQV 513
            +YD+LFK++LIG++GVGK+CL+ RF    +     +TIGVDF I+TVE +G+ +KLQIWDTAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS+ V  +LVG ++
Sbjct:    5 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 124          

HSP 2 Score: 41.2022 bits (95), Expect = 3.601e-40
Identity = 19/49 (38.78%), Postives = 32/49 (65.31%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 652
            NK DL   + VS + A+ F++   + ++ETSAK+S NVE+ F+ +A  +
Sbjct:  122 NKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.687e-40
Identity = 65/118 (55.08%), Postives = 88/118 (74.58%), Query Frame = 1
Query:  157 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R V  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+G +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNK 120          

HSP 2 Score: 46.9802 bits (110), Expect = 4.687e-40
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 652
            + NK DL + + V  E  +AFA E G+ FMETSAK + NVE+A++  A  I
Sbjct:  117 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEI 167          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.107e-40
Identity = 65/119 (54.62%), Postives = 92/119 (77.31%), Query Frame = 1
Query:  154 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            EYDYLFK++LIGDSGVGKS +L RF  + +     STIGV+F  RT++ +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV++WL E+  +A  N+  ++ G +
Sbjct:    8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNK 126          

HSP 2 Score: 41.9726 bits (97), Expect = 6.107e-40
Identity = 20/49 (40.82%), Postives = 31/49 (63.27%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 652
            NK DL   + VS E  +A A++ G+ F+ETSA ++ N+E+AF  +   I
Sbjct:  125 NKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEI 173          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.107e-40
Identity = 64/119 (53.78%), Postives = 85/119 (71.43%), Query Frame = 1
Query:  154 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  +T + +GK +K QIWDTAGQER+R ITS+YYRGA G +++YDVT   +F N  +WL E+  +   N+  +L+G +
Sbjct:    9 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNK 127          

HSP 2 Score: 48.9062 bits (115), Expect = 6.107e-40
Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 652
            + NKCDL     V  E AKAFA+   + FMETSA D+TNVE AF  +   I
Sbjct:  124 IGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQI 174          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.109e-40
Identity = 62/118 (52.54%), Postives = 88/118 (74.58%), Query Frame = 1
Query:  157 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+G +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120          

HSP 2 Score: 50.0618 bits (118), Expect = 6.109e-40
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 664
            + NK DL A + V  E  +AFA E G+ FMETSAK + NVE+AF+  A  I  ++
Sbjct:  117 IGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKI 171          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.109e-40
Identity = 62/118 (52.54%), Postives = 88/118 (74.58%), Query Frame = 1
Query:  157 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+G +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120          

HSP 2 Score: 50.0618 bits (118), Expect = 6.109e-40
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 664
            + NK DL + + V  E  +AFA E G+ FMETSAK ++NVE+AF+  A  I +++
Sbjct:  117 IGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.109e-40
Identity = 62/118 (52.54%), Postives = 88/118 (74.58%), Query Frame = 1
Query:  157 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+G +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNK 120          

HSP 2 Score: 50.0618 bits (118), Expect = 6.109e-40
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 664
            + NK DL + + V  E  +AFA E G+ FMETSAK ++NVE+AF+  A  I +++
Sbjct:  117 IGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
The following BLAST results are available for this feature:
BLAST of CF417146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2B_HUMAN2.119e-4055.08Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB30_MOUSE3.601e-4055.00Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN3.601e-4055.00Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN3.601e-4055.00Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB2B_MOUSE4.687e-4055.08Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RB2BV_BETVU6.107e-4054.62Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAA1A_ARATH6.107e-4053.78Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RAB2_LYMST6.109e-4052.54Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2A_RABIT6.109e-4052.54Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB6.109e-4052.54Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-076 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417146 ID=CF417146; Name=CF417146; organism=Citrus sinensis; type=EST; length=679bp
TTTTTTTTCTTTTTTGTCTTGTCTTCTGTTTTTGTTGACATTTAATTTCC
CGGCGAAACTCATATCACGAGATCTCGCCGAAGATAATAATCTGTTTTGG
TTAACCGAACCCGAAGCTTTTTTCTTTTACACAAATCTACGACGATGAAT
CCTGAATATGACTATCTGTTTAAGCTTCTGCTTATTGGAGATTCCGGTGT
TGGCAAATCTTGTCTTCTCTTGAGATTTGCTGATGATTCATATATTGAGA
GTTACATCAGCACCATAGGAGTTGATTTTAAAATACGCACTGTTGAGCAA
GATGGGAAGACCATTAAACTTCAAATTTGGGATACTGCTGGTCAAGAAAG
ATTTAGGACAATCACCAGCAGCTACTACCGTGGGGCACATGGTATCATAA
TTGTTTATGATGTGACAGACCAAGAGAGCTTCAATAATGTCAAGCAGTGG
TTGAATGAAATTGACCGTTATGCTAGTGATAATGTCAACAAACTTCTGGT
TGGNAAACAAGTGTGATCTCACTGCAAATAAGGNTGTCTCGTACGAAACA
GCCAAGGCATTTGCAGATGAAATTGGAATACCTTTCATGGAAACTAGTGC
AAAAGATTCTACCAACGTGGAACAGGCATTCATGGCCATGGCTGCTTCAA
TCAAGGATAGAATGGCAAGTCAACCATCC
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